Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 8.7e-47 190.3 119 100.0
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 1.5e-14 83.2 52 84.6
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 2.5e-14 82.4 52 82.7
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 6.3e-13 77.8 54 79.6
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.1e-12 77.0 57 71.9
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 2.4e-12 75.9 52 75.0
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 3.1e-12 75.5 54 77.8
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 3.1e-12 75.5 52 76.9
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 1.2e-11 73.6 50 76.0
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 1.2e-11 73.6 55 70.9
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 1.2e-11 73.6 54 72.2
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 1.5e-11 73.2 55 74.5
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 1.5e-11 73.2 55 74.5
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 2.6e-11 72.4 54 74.1
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 4.5e-11 71.6 53 71.7
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 2.2e-10 69.3 52 67.3
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 2.9e-10 68.9 53 71.7
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 5.0e-10 68.2 52 75.0
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 6.5e-10 67.8 54 70.4
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 8.5e-10 67.4 63 65.1
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 1.1e-09 67.0 48 68.8
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 1.4e-09 66.6 53 67.9
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 1.9e-09 66.2 54 70.4
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 2.5e-09 65.9 37 83.8
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 3.2e-09 65.5 54 70.4
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 3.2e-09 65.5 56 66.1
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 5.5e-09 64.7 49 75.5
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 9.4e-09 63.9 61 63.9
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 9.4e-09 63.9 56 66.1
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 1.2e-08 63.5 54 66.7
Os02g0533800 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 1.2e-08 63.5 63 60.3
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 1.2e-08 63.5 63 61.9
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 1.6e-08 63.2 61 62.3
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 1.6e-08 63.2 52 65.4
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 1.6e-08 63.2 56 66.1
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 2.1e-08 62.8 53 64.2
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 2.7e-08 62.4 53 66.0
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.6e-08 62.0 57 59.6
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.6e-08 62.0 57 59.6
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.6e-08 62.0 57 59.6
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 3.6e-08 62.0 59 59.3
COL.COLO4_37375 Corchorus olitorius HOM05D007506 ORTHO05D008409 4.7e-08 61.6 52 69.2
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 4.7e-08 61.6 54 64.8
TAR636G0277 Trochodendron aralioides HOM05D007506 ORTHO05D008409 4.7e-08 61.6 52 65.4
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 6.1e-08 61.2 59 59.3
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 7.9e-08 60.8 55 63.6
Aqoxy7G00782 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 7.9e-08 60.8 53 69.8
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 7.9e-08 60.8 50 68.0
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 7.9e-08 60.8 41 78.0
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 1.0e-07 60.5 57 63.2
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.0e-07 60.5 56 60.7
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 1.0e-07 60.5 56 60.7
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 1.0e-07 60.5 41 70.7
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 1.8e-07 59.7 61 60.7
Psat6g238400 Pisum sativum HOM05D007506 ORTHO05D008409 1.8e-07 59.7 53 62.3
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 1.8e-07 59.7 56 60.7
Nn6g34869 Nelumbo nucifera HOM05D007506 ORTHO05D008409 3.0e-07 58.9 54 66.7
Dinv02210 Davidia involucrata HOM05D007506 ORTHO05D008409 3.9e-07 58.5 55 61.8
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 5.1e-07 58.2 57 56.1
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 6.7e-07 57.8 33 87.9
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 8.8e-07 57.4 56 58.9
vmacro10310 Vaccinium macrocarpon HOM05D007506 ORTHO05D008409 8.8e-07 57.4 53 64.2
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 8.8e-07 57.4 55 63.6
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 1.1e-06 57.0 52 57.7
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.1e-06 57.0 52 57.7
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.1e-06 57.0 52 57.7
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.1e-06 57.0 52 57.7
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 2.0e-06 56.2 61 57.4
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 2.0e-06 56.2 52 59.6
SalBow6G2037 Salvia bowleyana HOM05D007506 ORTHO05D008409 2.0e-06 56.2 56 58.9
Sed0023104 Sechium edule HOM05D007506 ORTHO05D008409 2.0e-06 56.2 55 63.6
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 2.0e-06 56.2 29 86.2
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 2.6e-06 55.8 54 64.8
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 3.3e-06 55.5 56 55.4
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 3.3e-06 55.5 56 55.4
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 3.3e-06 55.5 56 62.5
Zm00001eb039390 Zea mays HOM05D007506 ORTHO05D008409 3.3e-06 55.5 54 61.1
MD11G1004700 Malus domestica HOM05D007506 ORTHO05D008409 4.4e-06 55.1 36 72.2
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 4.4e-06 55.1 58 60.3
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 4.4e-06 55.1 60 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 5.7e-06 54.7 52 61.5
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 5.7e-06 54.7 53 62.3
Lsat_1_v5_gn_8_24340 Lactuca sativa HOM05D021830 ORTHO05D025293 7.4e-06 54.3 49 63.3
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 7.4e-06 54.3 53 56.6
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 7.4e-06 54.3 56 55.4
SGA_v2.0_scaffold62G21316 Striga asiatica HOM05D007506 ORTHO05D008409 7.4e-06 54.3 30 86.7


User provided reference genes

Program Settings