Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 5.9e-229 797.3 456 100.0
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.8e-170 602.4 469 68.9
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.2e-165 587.0 469 67.4
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.7e-165 585.9 469 67.4
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.5e-163 579.3 469 66.1
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 1.8e-161 573.2 469 69.7
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.6e-157 560.1 491 63.3
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.6e-157 558.5 473 62.2
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.3e-156 556.2 473 67.9
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 6.7e-156 554.7 472 63.1
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.5e-155 553.5 473 64.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.0e-155 553.1 476 62.6
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 4.8e-154 548.5 472 62.9
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.1e-153 547.4 473 62.8
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 4.1e-153 545.4 473 66.6
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 5.9e-152 541.6 474 62.0
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.0e-151 540.8 474 63.3
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.4e-150 537.0 472 61.7
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 4.2e-150 535.4 471 65.4
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 5.5e-150 535.0 470 61.3
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 9.4e-150 534.3 463 62.2
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.0e-148 530.8 435 67.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.4e-148 530.4 472 63.3
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 5.2e-148 528.5 476 64.7
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.2e-148 528.5 479 61.6
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 6.7e-148 528.1 487 59.3
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.3e-146 523.9 383 70.5
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.7e-146 523.5 469 60.3
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.7e-146 523.5 435 63.2
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 8.2e-146 521.2 485 60.2
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 4.1e-145 518.8 469 60.6
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 9.1e-145 517.7 428 62.4
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.6e-144 516.9 432 63.0
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 5.9e-144 515.0 443 62.8
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 7.7e-144 514.6 473 60.9
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.5e-142 509.6 429 63.2
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 9.4e-142 507.7 487 57.3
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.3e-140 503.1 475 57.5
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 4.0e-140 502.3 437 61.3
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 5.2e-140 501.9 461 58.8
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 6.7e-140 501.5 367 71.9
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.7e-140 501.5 441 61.7
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.2e-139 500.7 431 61.5
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 7.5e-139 498.0 474 57.8
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.3e-138 497.3 449 59.9
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 2.2e-138 496.5 477 62.5
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 3.1e-137 492.7 446 61.7
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 4.1e-137 492.3 466 57.9
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 7.0e-137 491.5 466 58.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 9.1e-137 491.1 343 72.6
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.6e-136 490.3 432 61.1
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.7e-136 489.6 475 58.7
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 4.5e-136 488.8 438 61.0
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 5.9e-136 488.4 454 58.1
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 2.9e-135 486.1 389 64.8
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.1e-134 484.2 473 55.0
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.5e-134 483.0 441 60.1
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 2.5e-134 483.0 369 68.8
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 3.2e-134 482.6 475 58.3
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 5.5e-134 481.9 473 61.1
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 7.2e-134 481.5 441 59.9
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.6e-133 479.2 503 52.5
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 3.6e-133 479.2 387 64.9
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 3.6e-133 479.2 471 56.5
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 2.3e-132 476.5 470 57.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.0e-132 476.1 435 63.4
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 3.0e-132 476.1 435 61.4
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 5.2e-132 475.3 472 56.8
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.2e-132 475.3 472 54.9
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.5e-131 473.8 450 64.7
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 7.5e-131 471.5 439 57.2
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.7e-130 470.3 471 55.2
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.7e-130 469.2 470 55.1
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-129 466.5 478 56.7
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 9.1e-129 464.5 478 56.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.2e-128 464.2 480 54.6
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.6e-128 463.8 481 55.1
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.0e-128 463.4 529 50.7
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.0e-127 461.1 486 54.9
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 1.3e-127 460.7 438 63.7
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.7e-127 460.3 317 73.2
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 2.9e-127 459.5 475 53.9
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.8e-127 459.1 484 54.3
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 5.0e-127 458.8 434 56.0
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 8.6e-127 458.0 482 55.0
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 1.9e-126 456.8 473 53.3
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 3.3e-126 456.1 390 61.3
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 1.2e-125 454.1 446 56.5
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.2e-125 454.1 500 53.6
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-124 451.1 432 55.1
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.8e-124 450.3 460 54.8
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 2.3e-124 449.9 435 56.3
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 3.4e-123 446.0 375 70.7
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 4.4e-123 445.7 505 53.5
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 9.8e-123 444.5 425 55.8
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 8.3e-122 441.4 378 61.6
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.8e-121 440.3 422 55.7
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-121 439.9 440 57.3
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 2.4e-121 439.9 440 57.3
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.2e-120 437.6 462 54.3
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.6e-120 437.2 460 54.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.0e-120 436.8 461 54.7
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.7e-119 433.7 388 60.1
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 6.6e-119 431.8 448 53.3
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 5.6e-118 428.7 438 53.0
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 9.5e-118 427.9 324 66.7
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 9.5e-118 427.9 389 59.4
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.2e-117 427.6 487 51.3
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.6e-117 426.0 469 51.4
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.7e-117 425.6 440 52.5
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 4.4e-115 419.1 440 53.4
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.7e-114 417.2 501 50.3
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.8e-113 413.7 436 53.9
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 4.6e-112 409.1 440 51.8
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 6.6e-111 405.2 391 55.2
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.4e-108 397.5 357 57.1
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.4e-107 392.5 290 70.0
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.8e-107 391.3 386 54.1
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 1.4e-105 387.5 426 49.8
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.2e-105 386.3 386 52.8
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 9.2e-105 384.8 426 49.5
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.6e-104 384.0 383 52.5
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 4.6e-104 382.5 383 55.6
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.3e-103 380.9 333 60.4
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.7e-101 372.5 471 46.7
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 4.7e-101 372.5 378 51.3
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 8.1e-101 371.7 516 44.0
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 2.3e-100 370.2 332 58.1
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 8.9e-100 368.2 434 50.2
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 8.3e-98 361.7 429 49.2
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 2.4e-97 360.1 355 53.5
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 5.4e-97 359.0 327 60.6
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 2.1e-96 357.1 346 57.2
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.5e-91 340.9 335 52.2
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 6.0e-88 328.9 312 57.7
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 2.5e-86 323.6 428 47.7
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 4.3e-86 322.8 368 47.6
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 2.1e-85 320.5 423 47.5
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.8e-84 317.4 428 47.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 6.9e-84 315.5 383 49.9
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 3.4e-83 313.2 386 45.9
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.4e-83 312.8 441 44.9
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 6.4e-82 308.9 270 61.5
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-78 297.4 446 44.4
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 4.3e-78 296.2 389 46.0
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 5.6e-78 295.8 389 46.0
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 6.9e-76 288.9 372 48.1
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 2.0e-75 287.3 333 51.1
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-73 281.6 332 48.8
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.1e-65 255.0 233 58.8
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 2.2e-50 204.1 195 60.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.1e-49 201.8 346 37.0
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.4e-49 201.4 194 59.8
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.6e-48 196.4 144 64.6
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-42 178.7 185 51.4
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 7.2e-41 172.6 175 54.9
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.0e-35 154.5 94 77.7
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-32 145.2 164 50.0
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.4e-28 131.0 133 55.6
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 4.1e-28 130.2 150 51.3
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 2.5e-25 120.9 168 41.7
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-24 117.5 120 50.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 5.3e-20 103.2 125 48.0
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 9.1e-20 102.4 147 44.9
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 1.2e-19 102.1 267 32.2
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 4.5e-19 100.1 74 64.9
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.5e-18 95.9 116 44.8
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-17 95.5 120 48.3
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 4.2e-17 93.6 251 30.7
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 5.5e-17 93.2 77 59.7
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 2.8e-13 80.9 199 29.6
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.3e-10 72.0 64 64.1
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.3e-10 71.2 111 43.2
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 6.6e-10 69.7 199 27.6
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 8.6e-10 69.3 53 58.5
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.9e-09 68.2 52 53.8
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-09 68.2 52 53.8
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 4.7e-08 63.5 123 36.6
SHI14588 Sapria himalayana HOM05D003649 ORTHO05D004498 8.0e-08 62.8 44 72.7
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.0e-07 62.4 73 52.1
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 2.0e-06 58.2 39 66.7
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 5.7e-06 56.6 35 65.7


User provided reference genes

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