Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 4.3e-231 804.3 399 100.0
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 3.0e-152 542.3 395 67.6
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 7.7e-148 527.7 393 65.1
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.6e-140 503.4 398 63.1
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.5e-140 501.9 395 63.8
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 7.7e-140 501.1 400 62.0
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.0e-139 500.7 395 63.5
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.2e-139 499.6 395 63.5
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 4.2e-138 495.4 396 60.9
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 4.2e-138 495.4 395 63.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 7.2e-138 494.6 379 66.5
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 3.0e-136 489.2 396 61.4
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 4.0e-136 488.8 394 62.2
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 4.4e-135 485.3 400 61.2
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 7.5e-135 484.6 398 59.3
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 3.7e-134 482.3 399 60.4
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 5.4e-133 478.4 400 61.8
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 7.0e-133 478.0 401 60.3
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 9.1e-133 477.6 397 60.7
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 1.7e-131 473.4 399 59.4
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.0e-131 471.9 399 58.9
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 8.5e-131 471.1 401 59.1
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.5e-131 471.1 394 59.4
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.9e-130 469.9 399 58.6
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 9.4e-130 467.6 399 58.4
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.7e-129 466.1 399 58.4
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 4.7e-129 465.3 396 58.8
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.2e-127 460.7 400 56.2
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 3.4e-127 459.1 399 56.1
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.7e-126 456.8 396 58.3
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 7.0e-125 451.4 399 57.1
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.9e-124 448.4 361 63.4
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 2.5e-122 443.0 400 57.2
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 7.2e-122 441.4 399 56.1
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.8e-121 439.5 392 56.9
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 3.6e-121 439.1 400 58.0
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 4.7e-121 438.7 400 56.0
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 8.0e-121 438.0 399 56.9
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 1.0e-120 437.6 393 56.7
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.8e-120 436.8 403 55.3
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 2.3e-120 436.4 386 56.7
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 2.3e-120 436.4 399 56.1
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 1.5e-119 433.7 402 55.5
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 2.0e-119 433.3 400 55.5
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 2.0e-119 433.3 392 55.9
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 2.6e-119 433.0 400 55.8
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.6e-119 433.0 392 55.4
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 5.7e-119 431.8 400 56.0
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.7e-118 430.3 399 52.9
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.7e-118 430.3 399 52.9
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 2.2e-118 429.9 371 58.0
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 2.2e-118 429.9 393 56.0
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 3.7e-118 429.1 400 55.8
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.1e-117 427.6 396 53.3
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-117 427.2 379 57.3
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 3.2e-117 426.0 392 54.6
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 2.0e-116 423.3 401 55.4
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 4.6e-116 422.2 396 55.6
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 7.8e-116 421.4 399 52.1
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 1.0e-115 421.0 392 54.1
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.7e-115 420.2 392 54.8
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.3e-115 419.9 399 53.6
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 1.1e-114 417.5 387 54.8
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 1.5e-114 417.2 402 54.2
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 1.5e-114 417.2 402 54.2
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.9e-114 416.8 385 53.2
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.5e-114 416.4 396 54.5
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 3.3e-114 416.0 396 53.0
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 9.5e-114 414.5 399 53.9
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 2.8e-113 412.9 399 53.4
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 6.2e-113 411.8 388 53.6
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 8.0e-113 411.4 390 54.1
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 3.1e-112 409.5 393 53.4
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 4.0e-112 409.1 377 55.2
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 4.0e-112 409.1 396 52.0
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 5.2e-112 408.7 390 54.9
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 8.9e-112 407.9 390 54.4
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 4.4e-111 405.6 390 54.1
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 3.2e-109 399.4 391 51.9
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.2e-108 397.5 398 51.8
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 7.8e-108 394.8 380 51.6
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.1e-106 391.0 381 53.8
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 4.0e-104 382.5 399 50.9
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 5.2e-104 382.1 382 49.2
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 6.8e-104 381.7 404 50.0
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.6e-103 379.8 353 55.5
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 4.4e-103 379.0 355 54.9
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 7.5e-103 378.3 354 55.6
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 8.3e-102 374.8 353 55.5
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 7.1e-101 371.7 378 52.9
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.5e-100 369.4 345 55.1
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 3.0e-99 366.3 387 49.4
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.9e-98 363.6 381 49.1
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.2e-97 360.9 370 52.7
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 3.6e-97 359.4 304 59.2
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 5.4e-93 345.5 394 46.2
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 5.4e-93 345.5 387 49.1
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 6.0e-92 342.0 383 49.6
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 1.7e-91 340.5 287 61.3
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 3.1e-88 329.7 395 47.1
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-84 317.4 324 53.1
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 7.8e-84 315.1 391 45.0
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-74 283.9 294 53.4
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 1.8e-72 277.3 253 55.7
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 3.4e-71 273.1 294 51.0
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 2.9e-70 270.0 290 50.7
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 4.9e-70 269.2 262 55.0
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 5.5e-69 265.8 228 58.8
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 5.5e-69 265.8 316 46.2
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 1.6e-68 264.2 206 63.6
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 7.4e-66 255.4 196 62.2
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 4.8e-65 252.7 221 58.4
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 4.8e-65 252.7 408 38.0
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 6.9e-64 248.8 265 50.6
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 9.0e-64 248.4 174 70.7
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 3.0e-59 233.4 178 63.5
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.1e-58 231.5 192 57.8
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 1.2e-55 221.5 391 34.8
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.7e-50 202.6 169 59.2
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 5.5e-45 186.0 203 52.2
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.7e-41 173.3 322 35.7
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.8e-40 171.0 178 51.7
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-39 167.9 137 62.0
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 8.5e-38 162.2 253 38.7
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 3.2e-37 160.2 165 55.2
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.5e-37 159.5 278 37.1
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 4.7e-36 156.4 176 50.6
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.3e-35 154.1 162 46.3
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 7.4e-34 149.1 165 45.5
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.7e-28 129.8 111 61.3
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.0e-27 127.1 112 59.8
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.1e-26 125.2 107 56.1
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.1e-24 116.7 107 57.9
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 8.5e-22 109.0 97 51.5
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-14 85.5 113 41.6
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.5e-13 81.6 112 39.3
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.3e-09 65.9 87 40.2
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.0e-08 62.8 70 45.7
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 4.5e-07 60.1 52 48.1
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 5.0e-06 56.6 88 31.8


User provided reference genes

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