Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 4.8e-152 541.2 283 100.0
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.7e-130 467.6 298 80.5
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 7.4e-129 464.2 298 80.5
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.3e-128 461.1 298 79.5
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 1.2e-126 456.8 298 76.5
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.9e-126 454.5 298 78.2
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.7e-125 453.0 298 76.8
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.9e-125 452.2 297 78.1
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.8e-125 451.8 296 77.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.9e-124 449.5 299 77.6
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.5e-124 449.1 295 78.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 7.2e-124 447.6 297 77.4
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.2e-124 447.6 298 76.2
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 2.1e-123 446.0 297 75.4
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.7e-123 445.7 298 76.5
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.6e-123 445.3 298 75.8
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 7.9e-123 444.1 298 75.8
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.3e-122 442.6 293 77.1
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.3e-122 442.6 288 77.8
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.0e-122 442.2 297 74.4
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.0e-122 442.2 297 74.4
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.1e-122 441.4 297 74.1
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.1e-122 441.4 298 75.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.1e-122 441.4 298 75.2
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 6.7e-122 441.0 295 75.6
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.5e-121 439.9 298 75.5
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.3e-121 438.7 298 75.2
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 4.4e-121 438.3 297 73.7
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.3e-120 436.8 297 76.8
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.3e-120 436.8 297 74.1
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 3.7e-120 435.3 297 74.7
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 6.3e-120 434.5 297 74.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.3e-120 434.5 298 73.8
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 8.2e-120 434.1 297 75.1
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.1e-119 433.7 299 74.9
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.1e-119 433.7 297 75.1
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.8e-119 433.0 298 74.2
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 6.9e-119 431.0 299 74.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 9.1e-119 430.6 297 74.1
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.2e-118 430.3 301 75.1
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.2e-118 430.3 333 70.0
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.6e-118 429.1 296 73.6
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 3.4e-118 428.7 300 73.7
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 4.5e-118 428.3 324 70.4
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 5.9e-118 427.9 298 72.8
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 7.7e-118 427.6 301 73.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 2.2e-117 426.0 298 72.8
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 5.0e-117 424.9 287 75.6
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 5.0e-117 424.9 298 74.5
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 5.0e-117 424.9 298 74.2
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 6.5e-117 424.5 299 71.6
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 8.5e-117 424.1 298 74.2
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 8.5e-117 424.1 301 73.1
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.1e-116 423.7 298 73.8
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.4e-116 423.3 301 73.1
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.9e-116 422.9 296 73.0
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.5e-116 422.5 298 73.5
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 2.5e-116 422.5 298 73.5
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 2.5e-116 422.5 379 60.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.2e-116 422.2 298 73.8
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 4.2e-116 421.8 299 71.2
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 5.5e-116 421.4 298 73.5
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 7.2e-116 421.0 298 73.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 9.4e-116 420.6 283 76.3
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.6e-115 419.9 298 73.5
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.6e-115 419.9 298 73.5
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 4.7e-115 418.3 299 70.2
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 8.0e-115 417.5 298 72.8
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.0e-114 417.2 298 73.2
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.4e-114 416.8 301 70.4
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.8e-114 416.4 264 77.7
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.8e-114 416.4 291 71.5
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 2.3e-114 416.0 295 72.2
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 3.9e-114 415.2 296 72.6
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 3.9e-114 415.2 302 72.5
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 3.9e-114 415.2 304 70.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 5.2e-114 414.8 303 72.3
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 6.7e-114 414.5 297 70.4
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 6.7e-114 414.5 296 71.6
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 8.8e-114 414.1 291 71.5
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 8.8e-114 414.1 297 71.4
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.5e-113 413.3 291 71.5
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.5e-113 413.3 301 69.4
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.5e-113 413.3 298 70.1
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 3.3e-113 412.1 299 70.6
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.3e-113 412.1 291 71.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 3.3e-113 412.1 295 72.2
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 4.4e-113 411.8 298 70.1
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.4e-111 406.8 301 69.4
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-111 406.8 295 71.2
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.4e-111 406.0 298 69.8
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.4e-111 406.0 347 63.4
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 3.1e-111 405.6 296 70.6
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.3e-111 404.8 299 70.2
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.0e-111 404.4 300 69.0
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 2.6e-110 402.5 291 70.8
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.6e-110 402.5 272 74.3
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 4.5e-110 401.7 298 69.1
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 5.9e-110 401.4 296 70.3
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-109 399.8 299 70.6
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 5.0e-109 398.3 336 64.3
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 5.0e-109 398.3 300 69.7
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.1e-108 397.1 293 69.3
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.5e-108 396.7 299 69.2
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 9.4e-108 394.0 296 69.3
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 1.6e-107 393.3 296 67.9
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.1e-107 392.9 259 77.2
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.7e-107 392.5 305 66.9
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 4.7e-107 391.7 295 67.1
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.0e-106 390.6 296 68.2
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 5.2e-106 388.3 296 67.6
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 5.2e-106 388.3 265 72.1
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 8.8e-106 387.5 299 66.9
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 3.7e-104 382.1 264 71.2
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 3.7e-104 382.1 291 66.7
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 6.3e-104 381.3 274 72.6
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 6.3e-104 381.3 302 65.6
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.7e-102 374.4 257 71.6
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.7e-101 373.2 302 64.2
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.6e-99 366.7 284 68.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.7e-99 365.2 298 63.4
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.4e-98 363.6 303 62.4
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 4.4e-97 358.6 302 60.9
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 9.8e-97 357.5 302 59.6
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.2e-94 350.5 298 60.1
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 8.6e-93 344.4 299 60.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.9e-92 343.2 276 63.4
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 7.5e-89 331.3 215 76.3
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 9.2e-87 324.3 265 61.5
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.0e-83 311.2 230 70.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.4e-82 310.5 294 53.4
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 5.8e-81 305.1 288 52.8
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.7e-78 296.2 286 53.5
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 3.6e-75 285.8 274 56.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.4e-74 283.9 281 52.0
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.0e-73 280.0 285 52.6
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.1e-71 274.2 281 49.8
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.9e-71 273.5 281 49.5
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.6e-70 270.4 284 51.1
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.0e-69 267.7 293 49.1
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.1e-68 264.2 276 51.4
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 4.3e-68 262.3 247 57.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.2e-67 260.8 304 52.3
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 8.9e-66 254.6 199 65.8
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-64 250.0 209 63.2
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 4.1e-63 245.7 193 66.3
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.5e-60 237.3 238 51.7
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 4.7e-59 232.3 148 74.3
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.4e-58 230.7 186 64.5
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 6.0e-54 215.3 323 44.9
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.7e-53 213.8 183 59.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 3.9e-53 212.6 217 53.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 5.1e-53 212.2 149 71.1
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.1e-50 204.5 210 50.0
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 5.4e-47 192.2 291 39.2
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.5e-44 184.1 152 61.8
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 2.9e-32 143.3 283 32.2
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-28 131.3 103 68.9
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.6e-27 127.5 321 28.3
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.9e-23 114.0 104 55.8
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 5.1e-21 105.9 224 30.4
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.1e-20 104.8 67 76.1
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.1e-18 98.2 287 26.1
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 6.5e-16 89.0 300 28.0
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 4.2e-15 86.3 135 43.7
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.0e-12 77.4 184 37.0
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 3.4e-09 66.6 56 55.4
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 1.9e-07 60.8 41 65.9


User provided reference genes

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