Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 7.9e-245 850.1 464 100.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 7.3e-142 508.1 465 65.6
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 2.8e-141 506.1 470 66.4
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 2.2e-138 496.5 465 64.3
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 2.9e-138 496.1 469 65.9
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 9.3e-137 491.1 465 63.0
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.6e-136 488.8 465 64.5
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.9e-136 488.0 462 63.6
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 4.3e-134 482.3 488 61.9
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 4.0e-132 475.7 465 62.8
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.2e-131 474.2 465 64.3
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.0e-131 473.4 465 64.3
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 4.5e-131 472.2 467 62.3
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 7.6e-131 471.5 469 62.0
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-129 467.6 466 63.7
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 1.9e-129 466.8 467 63.6
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 7.1e-129 464.9 469 59.9
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.1e-128 463.4 462 61.5
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.7e-127 458.0 469 62.3
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.9e-126 456.8 462 60.8
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 7.4e-126 454.9 454 63.2
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.3e-125 454.1 486 59.7
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 6.2e-125 451.8 462 61.3
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.0e-123 446.8 467 61.0
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.1e-121 441.0 469 61.6
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.0e-119 434.5 465 59.1
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.8e-119 433.7 466 60.1
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.4e-116 423.3 456 60.3
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 5.3e-116 422.2 469 59.5
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 6.9e-116 421.8 484 56.4
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 9.0e-116 421.4 470 59.1
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 2.0e-115 420.2 467 58.0
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 1.7e-114 417.2 464 58.2
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 6.5e-114 415.2 468 57.5
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 2.5e-113 413.3 466 57.7
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.5e-113 413.3 453 59.4
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 4.2e-113 412.5 469 56.5
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 7.9e-112 408.3 512 53.3
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.1e-110 404.4 468 57.1
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.5e-110 404.1 482 54.6
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 4.3e-110 402.5 480 55.2
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.6e-109 400.6 430 61.6
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 2.8e-109 399.8 458 58.5
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.4e-108 397.5 465 57.4
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 1.8e-108 397.1 468 56.6
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.0e-107 393.7 472 55.3
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.9e-107 392.1 470 53.8
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.7e-106 390.6 472 54.4
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.2e-106 390.2 661 44.5
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.8e-106 389.4 456 57.5
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 6.5e-106 388.7 468 56.0
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 8.5e-106 388.3 467 55.2
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 8.5e-106 388.3 473 55.0
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 1.1e-105 387.9 462 55.4
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 3.2e-105 386.3 473 54.5
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 7.2e-105 385.2 356 65.7
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 9.4e-105 384.8 462 55.2
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 3.6e-104 382.9 465 54.8
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 3.6e-104 382.9 465 54.8
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.8e-103 380.6 469 54.4
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 2.0e-102 377.1 461 55.1
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 7.4e-102 375.2 467 53.7
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 9.7e-102 374.8 468 54.3
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.1e-100 371.3 315 68.6
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 6.9e-100 368.6 315 68.3
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 9.1e-100 368.2 469 52.9
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 1.2e-99 367.9 456 54.6
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 5.9e-99 365.5 456 54.6
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 5.9e-99 365.5 456 54.6
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 5.9e-99 365.5 466 54.1
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.3e-98 364.4 529 48.8
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 6.5e-98 362.1 473 54.5
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.6e-96 357.5 469 52.7
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 2.1e-96 357.1 465 53.1
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.6e-96 356.3 396 58.6
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 7.9e-96 355.1 464 52.2
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 3.0e-95 353.2 465 52.3
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 3.0e-95 353.2 456 52.6
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 5.1e-95 352.4 478 51.3
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.5e-94 350.9 460 52.4
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 2.0e-91 340.5 282 71.3
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.9e-90 336.7 449 51.9
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 3.6e-88 329.7 466 50.4
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 3.0e-87 326.6 470 48.9
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 3.0e-87 326.6 451 50.6
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.2e-87 325.9 463 48.8
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.3e-85 321.2 475 48.8
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.7e-85 320.9 449 51.0
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 4.5e-83 312.8 465 47.5
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 1.3e-82 311.2 509 44.2
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 3.8e-82 309.7 464 45.0
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.9e-81 307.4 466 47.6
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.5e-78 297.7 459 47.5
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 1.7e-77 294.3 262 67.9
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 2.2e-77 293.9 462 47.0
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.8e-74 283.1 453 47.7
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 8.5e-74 282.0 476 47.1
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 5.5e-73 279.3 470 45.3
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.7e-72 276.9 471 45.6
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 3.6e-72 276.6 453 43.3
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 4.4e-70 269.6 468 45.5
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 8.3e-69 265.4 371 49.1
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 9.5e-65 251.9 307 55.7
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.2e-64 251.5 298 50.3
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 2.3e-55 220.7 234 59.4
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 3.1e-55 220.3 493 39.1
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.2e-51 208.4 246 51.2
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 2.0e-46 191.0 484 38.4
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.4e-46 189.9 315 47.0
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.9e-44 184.5 291 44.0
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 2.2e-37 161.0 499 35.3
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.5e-33 148.3 165 60.0
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.8e-31 141.4 303 35.6
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 7.1e-28 129.4 88 81.8
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.7e-27 127.5 268 42.2
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.3e-26 125.2 197 45.7
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 1.7e-26 124.8 197 45.7
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.6e-24 118.2 165 50.9
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 4.0e-23 113.6 381 30.7
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 9.9e-22 109.0 93 65.6
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.4e-20 105.1 161 39.8
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 2.4e-20 104.4 93 63.4
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 7.1e-20 102.8 164 48.2
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 3.3e-17 94.0 156 46.2
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 2.8e-16 90.9 87 60.9
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.6e-16 90.5 190 41.6
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 8.4e-13 79.3 333 28.5
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 2.3e-10 71.2 49 71.4
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 9.6e-09 65.9 209 31.6
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 4.0e-07 60.5 81 49.4
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 5.3e-07 60.1 184 32.1


User provided reference genes

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