Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 7.2e-133 477.2 241 100.0
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.5e-98 360.9 244 79.5
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 1.3e-97 360.1 242 75.2
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.7e-97 359.8 244 78.3
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.7e-97 359.8 242 76.9
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.9e-97 359.0 242 76.4
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 8.3e-97 357.5 242 76.0
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.1e-96 357.1 242 78.1
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.4e-96 355.9 243 74.9
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 7.0e-96 354.4 242 75.6
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 7.0e-96 354.4 242 75.6
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 3.5e-95 352.1 242 76.9
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 7.8e-95 350.9 244 76.6
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.3e-94 350.1 242 76.4
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.7e-94 349.7 242 74.0
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 2.3e-94 349.4 242 75.2
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 6.6e-94 347.8 242 72.3
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.1e-93 347.1 246 73.2
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.5e-93 346.7 250 74.4
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.5e-93 346.7 242 71.9
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.9e-93 346.3 242 71.9
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 2.5e-93 345.9 242 73.6
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 5.6e-93 344.7 242 76.0
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 5.6e-93 344.7 242 71.1
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 5.6e-93 344.7 242 71.1
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 7.3e-93 344.4 242 74.8
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.6e-92 343.2 242 74.0
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 6.2e-92 341.3 243 74.9
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.2e-92 341.3 242 70.7
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 6.2e-92 341.3 242 74.4
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 3.1e-91 339.0 220 79.5
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 5.2e-91 338.2 243 72.0
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 2.0e-90 336.3 243 74.5
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 2.6e-90 335.9 243 72.4
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 3.4e-90 335.5 243 73.7
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.4e-90 335.5 243 73.7
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.4e-90 335.5 243 73.7
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 5.8e-90 334.7 242 74.4
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 7.5e-90 334.3 243 74.1
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.8e-90 334.0 243 73.3
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 9.8e-90 334.0 243 72.0
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.3e-89 333.6 242 74.8
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 3.7e-89 332.0 230 71.7
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 4.9e-89 331.6 245 73.1
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 8.3e-89 330.9 218 77.5
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.1e-88 330.5 216 76.9
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.9e-88 329.7 243 72.4
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 2.4e-88 329.3 242 72.7
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 5.4e-88 328.2 249 72.3
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.6e-87 326.6 187 85.0
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.1e-87 326.2 243 71.6
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 2.7e-87 325.9 252 70.6
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 3.5e-87 325.5 254 66.1
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 7.8e-87 324.3 241 71.4
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.3e-86 323.6 248 69.8
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.9e-86 322.0 220 71.8
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 6.6e-86 321.2 243 71.2
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.1e-85 320.5 244 70.5
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 5.6e-85 318.2 197 80.2
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 9.5e-85 317.4 245 70.6
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 9.5e-85 317.4 253 68.0
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.1e-84 316.2 217 73.7
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.6e-84 315.5 216 73.6
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.0e-83 312.0 245 65.3
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 5.2e-83 311.6 244 68.0
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 5.2e-83 311.6 242 67.4
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 6.8e-83 311.2 245 69.0
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 6.8e-83 311.2 219 71.7
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 8.9e-83 310.8 217 70.5
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 8.9e-83 310.8 242 69.8
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 2.6e-82 309.3 250 67.2
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 3.4e-82 308.9 250 66.0
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 3.4e-82 308.9 237 69.6
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 4.4e-82 308.5 243 65.4
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 4.4e-82 308.5 250 65.6
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 7.6e-82 307.8 245 64.5
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 7.6e-82 307.8 214 72.4
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 9.9e-82 307.4 220 70.9
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 2.2e-81 306.2 244 68.4
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.9e-81 305.8 242 65.7
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.1e-80 303.9 215 74.0
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.1e-80 303.9 244 67.2
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.4e-80 303.5 231 66.7
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 7.1e-80 301.2 248 65.3
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.2e-79 300.4 250 64.4
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 2.7e-79 299.3 247 64.8
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 3.5e-79 298.9 247 63.2
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 6.0e-79 298.1 242 68.6
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.3e-78 297.0 192 76.6
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 2.3e-78 296.2 220 70.0
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 2.3e-78 296.2 245 66.5
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 3.9e-78 295.4 251 62.9
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 5.1e-78 295.0 245 62.9
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 8.6e-78 294.3 248 62.1
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 8.6e-78 294.3 189 76.7
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.1e-77 293.9 247 62.3
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 2.5e-77 292.7 252 64.3
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 4.3e-77 292.0 246 65.0
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 5.6e-77 291.6 212 68.4
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 9.6e-77 290.8 249 63.5
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 9.6e-77 290.8 245 62.4
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.2e-76 290.4 186 76.3
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 6.2e-76 288.1 244 63.5
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 6.2e-76 288.1 244 63.5
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 8.1e-76 287.7 247 62.8
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.1e-75 287.3 217 71.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 7.6e-74 281.2 188 77.7
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 7.6e-74 281.2 190 73.7
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.4e-72 276.2 212 65.6
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 4.2e-72 275.4 251 59.8
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 2.3e-70 269.6 198 70.2
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 5.1e-70 268.5 235 59.1
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 8.1e-68 261.2 168 78.0
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 7.1e-64 248.1 254 52.8
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 1.6e-63 246.9 195 69.7
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.0e-54 216.1 189 64.0
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 2.5e-53 213.0 120 85.0
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 9.6e-53 211.1 121 83.5
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 2.2e-49 199.9 166 63.3
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.9e-49 199.5 188 55.9
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 4.2e-48 195.7 121 78.5
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 4.6e-47 192.2 111 79.3
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 3.1e-43 179.5 147 55.8
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.4e-42 176.0 179 48.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.2e-40 169.1 173 52.0
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 4.6e-39 165.6 174 47.7
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 5.3e-35 152.1 169 43.8
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 4.8e-28 129.0 68 86.8
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 1.3e-25 120.9 175 36.0
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.8e-19 100.5 116 53.4
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 3.8e-17 92.8 153 32.7
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.6e-15 87.4 107 47.7
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.0e-14 84.7 123 45.5
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 2.2e-12 77.0 132 34.1
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 4.7e-07 59.3 67 53.7


User provided reference genes

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