Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 4.3e-26 120.6 60 100.0
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.9e-14 81.3 53 71.7
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.1e-13 79.3 51 74.5
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.4e-13 79.0 49 75.5
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.9e-13 78.6 46 78.3
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 2.4e-13 78.2 48 75.0
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 5.4e-13 77.0 54 66.7
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.2e-13 76.3 49 73.5
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.2e-12 75.9 45 75.6
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 1.2e-12 75.9 45 77.8
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.2e-12 75.9 48 75.0
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.6e-12 75.5 45 75.6
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.6e-12 75.5 49 69.4
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.6e-12 75.5 45 73.3
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 2.1e-12 75.1 50 68.0
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.7e-12 74.7 48 72.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 2.7e-12 74.7 51 68.6
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.7e-12 74.7 51 64.7
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.7e-12 74.7 51 66.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 3.5e-12 74.3 48 70.8
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 3.5e-12 74.3 46 71.7
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.5e-12 74.3 46 71.7
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 3.5e-12 74.3 49 71.4
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 3.5e-12 74.3 49 71.4
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 3.5e-12 74.3 49 67.3
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 4.6e-12 73.9 50 66.0
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 4.6e-12 73.9 48 68.8
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 4.6e-12 73.9 57 61.4
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.6e-12 73.9 50 70.0
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 4.6e-12 73.9 48 68.8
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.0e-12 73.6 46 69.6
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 6.0e-12 73.6 45 75.6
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 6.0e-12 73.6 45 75.6
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 7.8e-12 73.2 49 63.3
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.0e-11 72.8 48 68.8
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.0e-11 72.8 49 67.3
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.0e-11 72.8 50 68.0
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.3e-11 72.4 51 60.8
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.7e-11 72.0 45 73.3
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.7e-11 72.0 46 71.7
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.3e-11 71.6 55 63.6
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.3e-11 71.6 55 61.8
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 3.0e-11 71.2 50 66.0
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 3.9e-11 70.9 54 59.3
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 3.9e-11 70.9 50 66.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 3.9e-11 70.9 58 63.8
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.9e-11 70.9 53 64.2
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.9e-11 70.9 48 66.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.9e-11 70.9 46 67.4
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 3.9e-11 70.9 50 66.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 5.1e-11 70.5 54 66.7
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 5.1e-11 70.5 48 62.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 5.1e-11 70.5 45 68.9
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 5.1e-11 70.5 45 71.1
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 5.1e-11 70.5 55 61.8
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.6e-11 70.1 50 66.0
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 6.6e-11 70.1 49 67.3
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 6.6e-11 70.1 45 71.1
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 6.6e-11 70.1 50 66.0
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 8.6e-11 69.7 48 70.8
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 8.6e-11 69.7 54 59.3
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.1e-10 69.3 56 64.3
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.5e-10 68.9 50 64.0
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.5e-10 68.9 51 68.6
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.9e-10 68.6 45 66.7
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.9e-10 68.6 45 66.7
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.9e-10 68.6 45 71.1
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.9e-10 68.6 50 66.0
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 4.3e-10 67.4 50 64.0
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 4.3e-10 67.4 48 64.6
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 4.3e-10 67.4 45 68.9
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 4.3e-10 67.4 55 61.8
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 4.3e-10 67.4 52 61.5
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 5.6e-10 67.0 48 66.7
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 5.6e-10 67.0 47 66.0
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 7.3e-10 66.6 45 64.4
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 7.3e-10 66.6 50 62.0
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 7.3e-10 66.6 50 64.0
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 7.3e-10 66.6 50 64.0
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 7.3e-10 66.6 50 62.0
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 9.5e-10 66.2 55 58.2
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 9.5e-10 66.2 50 64.0
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 9.5e-10 66.2 50 66.0
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 9.5e-10 66.2 52 63.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 9.5e-10 66.2 45 68.9
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.2e-09 65.9 50 64.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.2e-09 65.9 50 64.0
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.2e-09 65.9 45 66.7
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.2e-09 65.9 50 60.0
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.6e-09 65.5 50 62.0
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.1e-09 65.1 48 64.6
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.1e-09 65.1 50 66.0
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.8e-09 64.7 49 57.1
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.8e-09 64.7 49 57.1
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 4.7e-09 63.9 52 61.5
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 6.2e-09 63.5 43 67.4
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 6.2e-09 63.5 49 57.1
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 8.1e-09 63.2 48 60.4
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 8.1e-09 63.2 47 61.7
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 8.1e-09 63.2 45 62.2
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.4e-08 62.4 45 62.2
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.8e-08 62.0 48 60.4
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 3.1e-08 61.2 45 60.0
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.1e-08 61.2 43 62.8
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 3.1e-08 61.2 48 62.5
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.2e-08 60.5 48 64.6
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 8.9e-08 59.7 49 55.1
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 8.9e-08 59.7 45 55.6
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.5e-07 58.9 48 62.5
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 3.4e-07 57.8 48 52.1
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.8e-07 57.0 55 54.5
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 7.6e-07 56.6 43 60.5
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 7.6e-07 56.6 36 66.7
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 9.9e-07 56.2 53 54.7
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.2e-06 55.1 40 65.0
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 2.2e-06 55.1 43 58.1
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.9e-06 54.7 47 55.3
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 6.4e-06 53.5 43 55.8


User provided reference genes

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