Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 3.0e-210 734.9 382 100.0
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 6.9e-138 494.6 352 75.9
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 1.9e-135 486.5 353 72.8
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 3.5e-134 482.3 346 76.6
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 4.6e-134 481.9 378 70.1
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 7.9e-134 481.1 356 72.5
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 1.8e-133 479.9 350 74.0
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 1.8e-133 479.9 353 73.4
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 1.8e-133 479.9 346 76.0
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 4.8e-131 471.9 350 72.0
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 6.3e-131 471.5 350 73.1
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 8.2e-131 471.1 349 72.8
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 8.2e-131 471.1 353 72.0
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 1.1e-130 470.7 349 72.8
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.4e-130 470.3 349 73.1
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 1.2e-129 467.2 347 73.8
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.0e-129 466.5 347 74.4
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.0e-129 466.5 348 73.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 1.0e-128 464.2 347 73.8
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.2e-128 463.0 347 73.5
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 6.5e-128 461.5 348 73.3
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 6.5e-128 461.5 347 75.5
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 1.4e-127 460.3 346 72.3
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 1.9e-127 459.9 350 70.6
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 1.9e-127 459.9 352 70.2
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 7.2e-127 458.0 349 70.8
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 1.2e-126 457.2 347 70.9
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 3.6e-126 455.7 353 71.4
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 2.5e-124 449.5 352 70.7
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 2.2e-123 446.4 352 67.6
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 4.8e-123 445.3 351 67.5
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 4.8e-123 445.3 346 70.2
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 4.8e-123 445.3 345 69.9
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 6.3e-123 444.9 350 71.1
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 8.2e-123 444.5 351 67.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 6.9e-122 441.4 350 71.4
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.2e-121 440.7 347 68.6
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.2e-121 440.7 355 68.7
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 4.5e-121 438.7 345 70.7
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 1.0e-120 437.6 352 69.3
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 1.7e-120 436.8 346 67.9
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 2.9e-120 436.0 352 68.8
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 5.0e-120 435.3 346 67.6
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 5.0e-120 435.3 353 69.7
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.9e-119 433.3 346 67.6
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 5.5e-119 431.8 353 67.1
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 5.5e-119 431.8 353 69.7
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 9.4e-119 431.0 349 66.8
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 1.2e-118 430.6 352 67.6
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 1.8e-117 426.8 355 66.5
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 1.1e-116 424.1 351 66.7
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.5e-116 423.7 359 67.1
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 3.3e-116 422.5 349 65.0
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 4.4e-116 422.2 354 68.6
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 5.7e-116 421.8 349 65.6
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 5.7e-116 421.8 348 68.1
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 2.2e-115 419.9 352 66.5
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.8e-115 419.5 346 67.3
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 2.8e-115 419.5 376 63.8
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 3.7e-115 419.1 351 66.1
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 4.8e-115 418.7 333 67.9
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 6.3e-115 418.3 344 67.7
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 8.2e-115 417.9 349 65.3
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 8.2e-115 417.9 345 68.7
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 2.4e-114 416.4 345 66.4
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 4.1e-114 415.6 347 64.6
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 4.1e-114 415.6 347 64.6
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 5.3e-114 415.2 345 65.8
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 7.0e-114 414.8 332 69.3
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 9.1e-114 414.5 349 64.5
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 9.1e-114 414.5 389 62.7
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.5e-113 413.7 353 65.4
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 2.6e-113 412.9 347 64.3
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.6e-113 412.9 346 66.5
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 4.5e-113 412.1 347 64.3
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 4.5e-113 412.1 350 63.7
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 5.9e-113 411.8 353 66.9
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 1.7e-112 410.2 342 64.3
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 6.5e-112 408.3 346 64.5
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 6.5e-112 408.3 346 64.5
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 8.5e-112 407.9 328 66.5
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 8.5e-112 407.9 346 64.7
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.5e-111 407.1 348 67.0
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.9e-111 406.8 346 65.9
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 1.4e-109 400.6 355 65.1
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 5.2e-109 398.7 353 61.8
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 8.8e-109 397.9 332 65.1
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 7.4e-108 394.8 349 63.0
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 2.2e-107 393.3 346 63.6
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 2.2e-107 393.3 354 61.3
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 5.3e-106 388.7 350 62.6
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 7.0e-106 388.3 348 61.8
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 5.0e-104 382.1 353 61.8
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 7.2e-103 378.3 349 59.9
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 2.1e-102 376.7 346 60.4
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 2.1e-102 376.7 346 60.4
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 1.8e-101 373.6 353 61.5
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.5e-100 370.5 356 62.6
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 2.6e-100 369.8 356 62.4
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.6e-100 369.8 351 62.7
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.7e-99 365.9 348 62.6
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 8.3e-99 364.8 345 60.3
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.1e-98 364.4 368 59.5
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 1.1e-98 364.4 345 60.0
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 4.5e-97 359.0 333 61.3
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.7e-96 357.1 352 58.5
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.2e-92 344.4 355 55.5
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 4.9e-91 339.0 349 59.3
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 4.5e-89 332.4 294 64.6
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 1.0e-88 331.3 308 61.4
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.3e-85 320.1 345 55.1
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 4.0e-85 319.3 293 63.5
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 4.0e-85 319.3 360 53.3
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 3.4e-84 316.2 343 53.1
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 1.8e-82 310.5 342 52.9
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 1.2e-78 297.7 288 60.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 6.6e-72 275.4 274 56.9
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 7.8e-65 251.9 348 45.7
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 8.9e-61 238.4 365 41.1
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.2e-59 233.8 349 43.8
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 6.4e-59 232.3 196 67.9
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 2.2e-51 207.2 215 53.5
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.7e-49 200.3 194 65.5
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.1e-48 196.1 197 59.9
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 6.2e-46 189.1 341 38.1
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.4e-42 177.2 163 60.7
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 7.9e-41 172.2 120 79.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 5.1e-40 169.5 345 37.4
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 8.7e-40 168.7 343 37.6
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 9.6e-31 138.7 104 69.2
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 7.1e-26 122.5 149 53.7
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 6.0e-25 119.4 211 37.4
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.0e-24 118.6 355 30.7
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.3e-22 111.7 86 70.9
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.2e-17 95.1 81 61.7
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 9.0e-13 79.0 65 67.7
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 2.9e-11 73.9 50 78.0
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 3.0e-08 63.9 56 64.3
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 1.3e-06 58.5 80 42.5
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.3e-06 58.5 55 58.2
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.3e-06 58.5 55 58.2


User provided reference genes

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