Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc53.120 Carica papaya HOM05D008138 ORTHO05D010043 7.7e-65 250.4 130 100.0
Thecc.02G319500 Theobroma cacao HOM05D008138 ORTHO05D010043 1.0e-24 117.1 101 58.4
Sed0002378 Sechium edule HOM05D008138 ORTHO05D010043 1.2e-17 93.6 93 51.6
Lj2g0015438 Lotus japonicus HOM05D008138 ORTHO05D010043 1.6e-17 93.2 91 53.8
Glyma.01G069000 Glycine max HOM05D008138 ORTHO05D010043 6.0e-17 91.3 91 52.7
QL10p055344 Quercus lobata HOM05D008138 ORTHO05D010043 6.0e-17 91.3 87 52.9
ClCG05G023400 Citrullus lanatus HOM05D008138 ORTHO05D010043 7.8e-17 90.9 95 50.5
GSVIVG01010138001 Vitis vinifera HOM05D008138 ORTHO05D010043 1.3e-16 90.1 94 50.0
GSVIVG01010131001 Vitis vinifera HOM05D008138 ORTHO05D010043 3.0e-16 89.0 95 47.4
Glyma.02G125900 Glycine max HOM05D008138 ORTHO05D010043 8.7e-16 87.4 91 49.5
Potri.013G126000 Populus trichocarpa HOM05D008138 ORTHO05D010043 2.5e-15 85.9 89 44.9
QL08p042110 Quercus lobata HOM05D008138 ORTHO05D010043 2.5e-15 85.9 87 47.1
Sabra13G0105400 Salix brachista HOM05D008138 ORTHO05D010043 1.6e-14 83.2 89 47.2
CSS0048436 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 2.1e-14 82.8 98 42.9
QL10p055339 Quercus lobata HOM05D008138 ORTHO05D010043 2.8e-14 82.4 87 47.1
CSS0025185 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 3.6e-14 82.0 98 41.8
CSS0030227 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 3.6e-14 82.0 98 41.8
CSS0046654 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 4.8e-14 81.6 98 42.9
CSS0008104 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 6.2e-14 81.3 97 42.3
CSS0008280 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 8.1e-14 80.9 112 37.5
Prupe.1G297700 Prunus persica HOM05D008138 ORTHO05D010043 1.1e-13 80.5 93 50.5
CSS0015628 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 2.4e-13 79.3 98 40.8
CSS0039010 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 2.4e-13 79.3 113 38.9
Dinv01548 Davidia involucrata HOM05D008138 ORTHO05D010043 3.1e-13 79.0 102 44.1
Nn3g17583 Nelumbo nucifera HOM05D008138 ORTHO05D010043 6.9e-13 77.8 123 36.6
CSS0004656 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 2.0e-12 76.3 98 39.8
CSS0022599 Camellia sinensis var. sinensis HOM05D008138 ORTHO05D010043 3.4e-12 75.5 98 39.8
QL10p055072 Quercus lobata HOM05D008138 ORTHO05D010043 3.4e-12 75.5 90 46.7
TPR.G2576 Trifolium pratense HOM05D008138 ORTHO05D010043 4.4e-12 75.1 92 43.5
Cpa.g.sc9.360 Carica papaya HOM05D008138 ORTHO05D010043 5.8e-12 74.7 95 41.1
Eucgr.B03099 Eucalyptus grandis HOM05D008138 ORTHO05D010043 9.9e-12 73.9 108 40.7
QL10p055376 Quercus lobata HOM05D008138 ORTHO05D010043 1.3e-11 73.6 85 42.4
Nn4g23585 Nelumbo nucifera HOM05D008138 ORTHO05D010043 2.9e-11 72.4 94 41.5
ClCG01G007380 Citrullus lanatus HOM05D022360 ORTHO05D010043 4.9e-11 71.6 95 45.3
QL10p055198 Quercus lobata HOM05D008138 ORTHO05D010043 4.9e-11 71.6 88 45.5
TAR629G0219 Trochodendron aralioides HOM05D008138 ORTHO05D010043 6.4e-11 71.2 100 47.0
QL10p055147 Quercus lobata HOM05D008138 ORTHO05D010043 1.1e-10 70.5 90 42.2
Ciclev10022667m.g Citrus clementina HOM05D017113 ORTHO05D019028 1.4e-10 70.1 96 43.8
QL10p055293 Quercus lobata HOM05D008138 ORTHO05D010043 1.4e-10 70.1 85 42.4
Sed0011337 Sechium edule HOM05D022360 ORTHO05D010043 1.9e-10 69.7 95 45.3
CsaV3_5G018850 Cucumis sativus L. HOM05D022360 ORTHO05D034989 2.4e-10 69.3 95 45.3
Gorai.013G098900 Gossypium raimondii HOM05D033109 ORTHO05D010043 5.4e-10 68.2 61 57.4
CsaV3_5G033610 Cucumis sativus L. HOM05D008138 ORTHO05D010043 9.3e-10 67.4 71 47.9
QL10p055255 Quercus lobata HOM05D008138 ORTHO05D010043 1.6e-09 66.6 88 36.4
Gohir.A13G091345 Gossypium hirsutum HOM05D033109 ORTHO05D010043 3.5e-09 65.5 62 54.8
Rhsim09G0118100 Rhododendron simsii HOM05D008138 ORTHO05D010043 4.6e-09 65.1 87 41.4
Rhsim09G0118800 Rhododendron simsii HOM05D008138 ORTHO05D010043 1.3e-08 63.5 85 42.4
QL93p1902_0029 Quercus lobata HOM05D008138 ORTHO05D010043 1.7e-08 63.2 90 40.0
Ciclev10022615m.g Citrus clementina HOM05D017113 ORTHO05D019028 2.3e-08 62.8 92 39.1
Ciclev10022666m.g Citrus clementina HOM05D017113 ORTHO05D019028 2.3e-08 62.8 96 41.7
Ciclev10022611m.g Citrus clementina HOM05D017113 ORTHO05D019028 3.9e-08 62.0 92 39.1
QL10p055607 Quercus lobata HOM05D008138 ORTHO05D010043 6.6e-08 61.2 89 41.6
Dinv16583 Davidia involucrata HOM05D008138 ORTHO05D010043 8.7e-08 60.8 77 45.5
QL10p054634 Quercus lobata HOM05D008138 ORTHO05D010043 8.7e-08 60.8 82 36.6
Ciclev10033630m.g Citrus clementina HOM05D008138 ORTHO05D010043 5.6e-07 58.2 93 36.6
Eucgr.G01572 Eucalyptus grandis HOM05D008138 ORTHO05D010043 5.6e-07 58.2 99 34.3
TAR629G0644 Trochodendron aralioides HOM05D008138 ORTHO05D010043 5.6e-07 58.2 117 34.2
Nn1g02864 Nelumbo nucifera HOM05D008138 ORTHO05D010043 1.6e-06 56.6 84 42.9
Nn3g17585 Nelumbo nucifera HOM05D008138 ORTHO05D010043 1.6e-06 56.6 88 36.4
Eucgr.G02403 Eucalyptus grandis HOM05D008138 ORTHO05D010043 2.1e-06 56.2 99 35.4
Eucgr.G01398 Eucalyptus grandis HOM05D008138 ORTHO05D010043 2.8e-06 55.8 99 33.3
Dinv33884 Davidia involucrata HOM05D008138 ORTHO05D010043 4.8e-06 55.1 71 35.2
Cfa007720 Carpinus fangiana HOM05D008138 ORTHO05D010043 6.2e-06 54.7 88 37.5
Duzib151G0273 Durio zibethinus HOM05D008138 ORTHO05D010043 6.2e-06 54.7 97 34.0
RhsimUnG0090300 Rhododendron simsii HOM05D009462 ORTHO05D013623 6.2e-06 54.7 117 36.8


User provided reference genes

Program Settings