Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 0.0e+00 1942.2 982 100.0
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1154.4 967 61.5
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 0.0e+00 1149.0 967 61.1
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 0.0e+00 1143.6 964 61.5
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1138.3 967 60.5
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 0.0e+00 1128.2 967 60.7
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 0.0e+00 1120.5 959 60.9
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 0.0e+00 1119.8 975 60.3
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 0.0e+00 1117.8 976 59.3
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 0.0e+00 1114.8 977 59.8
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 0.0e+00 1112.8 976 60.6
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 0.0e+00 1104.7 982 59.5
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 0.0e+00 1102.4 973 58.5
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 0.0e+00 1099.7 968 59.5
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 0.0e+00 1086.2 973 56.9
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 6.7e-312 1074.7 968 58.5
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 2.1e-300 1035.8 971 56.0
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 1.7e-297 1026.2 971 54.5
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 3.0e-286 988.8 994 53.6
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 4.5e-282 974.9 950 55.6
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.6e-279 966.5 973 53.4
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 6.1e-279 964.5 971 53.1
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.7e-273 946.4 980 52.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 8.5e-273 944.1 971 51.6
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 4.2e-272 941.8 974 51.6
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.5e-269 933.3 977 51.3
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 1.4e-264 916.8 970 50.5
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.8e-262 909.8 973 48.9
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 2.3e-262 909.4 979 53.0
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 1.4e-259 900.2 972 50.8
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 4.0e-246 855.5 777 57.4
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.2e-245 854.0 976 49.6
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 5.7e-245 851.7 971 48.7
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 4.7e-239 832.0 1074 45.3
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 5.9e-234 815.1 1078 44.4
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 4.9e-220 768.8 1195 40.3
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.0e-201 708.0 489 72.6
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 1.7e-201 707.2 485 71.1
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 4.3e-200 702.6 604 60.4
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.3e-191 674.5 484 69.6
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.4e-190 670.2 454 72.7
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 3.4e-189 666.4 465 69.7
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 2.9e-188 663.3 499 66.5
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 6.4e-188 662.1 472 68.2
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 4.2e-187 659.4 482 66.6
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.0e-185 654.8 456 70.2
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 3.9e-185 652.9 551 62.6
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 5.6e-184 649.0 458 67.7
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.7e-180 637.5 455 66.4
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.8e-177 627.5 465 67.3
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.6e-175 620.9 463 66.5
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 2.1e-175 620.5 502 61.8
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 4.8e-175 619.4 458 68.1
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.5e-173 614.4 511 61.4
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 6.5e-172 609.0 458 65.7
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 8.4e-172 608.6 1306 33.1
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.1e-171 608.2 488 63.1
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.6e-170 604.4 458 65.7
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 2.7e-170 603.6 458 63.8
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 1.3e-169 601.3 461 64.4
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.8e-169 600.9 509 59.5
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 3.9e-169 599.7 384 76.0
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.5e-168 597.8 472 62.7
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 7.4e-168 595.5 753 45.9
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.4e-166 591.3 509 57.8
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 2.4e-166 590.5 509 58.2
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 4.1e-166 589.7 465 64.1
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 9.0e-166 588.6 463 63.3
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.5e-165 587.8 465 63.9
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.4e-163 581.3 510 59.0
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 1.8e-161 574.3 506 58.3
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 3.3e-160 570.1 733 46.7
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 7.4e-160 568.9 460 63.3
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.8e-159 567.0 460 62.8
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 5.3e-158 562.8 460 59.8
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 2.0e-157 560.8 450 62.0
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 3.4e-157 560.1 477 61.2
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 5.9e-157 559.3 475 59.6
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 7.7e-157 558.9 464 60.8
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.7e-156 557.8 450 62.0
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 2.2e-156 557.4 458 60.9
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 3.8e-156 556.6 450 61.8
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.4e-155 554.7 455 59.1
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.5e-155 553.9 450 62.9
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 6.1e-154 549.3 450 62.2
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 5.7e-152 542.7 460 60.9
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 2.8e-151 540.4 1030 35.4
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.1e-150 538.5 1083 34.3
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.2e-149 535.0 1054 34.2
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 5.0e-148 529.6 474 58.4
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.6e-146 524.6 487 57.3
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 8.2e-143 512.3 456 56.1
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 3.5e-141 506.9 340 73.2
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.3e-140 505.0 352 68.8
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 4.2e-139 500.0 365 68.5
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 7.5e-136 489.2 469 56.3
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 7.5e-136 489.2 469 56.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 4.8e-135 486.5 355 68.7
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 2.5e-131 474.2 694 41.1
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 9.4e-131 472.2 472 52.1
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.2e-130 471.9 702 40.3
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 3.3e-123 447.2 354 64.7
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 3.7e-119 433.7 638 41.7
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 1.1e-118 432.2 453 50.1
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.0e-113 415.6 375 58.1
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 3.4e-112 410.6 469 46.3
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 2.3e-108 397.9 363 58.4
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 3.6e-106 390.6 984 30.6
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 9.8e-104 382.5 474 46.0
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 9.2e-94 349.4 367 51.8
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 1.6e-93 348.6 416 43.8
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.9e-91 341.7 257 66.5
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 4.9e-79 300.4 327 48.3
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 9.9e-72 276.2 469 40.1
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.2e-69 269.2 258 53.5
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.4e-65 255.8 196 68.4
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 1.8e-65 255.4 208 60.6
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.0e-64 251.9 168 71.4
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 2.9e-63 248.1 179 68.7
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 1.2e-53 216.1 189 59.8
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 2.3e-44 185.3 124 69.4
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 7.9e-37 160.2 235 42.6
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 1.3e-34 152.9 318 34.6
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 3.3e-27 128.3 146 47.9
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 3.2e-22 111.7 75 68.0
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 9.4e-22 110.2 163 42.3
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 3.0e-12 78.6 79 50.6
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 2.7e-08 65.5 42 64.3
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 3.5e-08 65.1 124 37.1


User provided reference genes

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