Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 2.4e-181 638.6 312 100.0
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.3e-131 473.4 310 71.9
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 6.9e-128 461.1 310 70.6
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 3.8e-126 455.3 312 72.4
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.9e-125 453.0 316 70.9
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 2.7e-124 449.1 311 70.4
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 1.3e-123 446.8 311 70.4
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 3.0e-123 445.7 311 72.7
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.5e-122 443.4 313 68.7
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.5e-122 443.4 310 67.7
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.9e-122 443.0 310 67.7
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 1.9e-122 443.0 312 69.6
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.3e-122 442.2 312 67.6
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 3.3e-122 442.2 311 71.4
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.6e-121 439.9 311 68.8
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.8e-121 439.1 307 69.7
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 4.8e-121 438.3 310 69.0
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.1e-120 437.2 312 67.3
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 6.9e-120 434.5 315 68.6
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.2e-119 433.7 292 71.9
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 4.5e-119 431.8 324 68.5
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 7.7e-119 431.0 313 69.6
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 7.7e-119 431.0 313 69.6
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.0e-118 430.6 312 71.2
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.3e-118 430.3 310 68.7
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 1.7e-118 429.9 314 68.8
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.9e-118 429.1 315 70.2
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.9e-118 429.1 315 69.8
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 6.5e-118 427.9 289 71.6
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.4e-117 426.8 313 66.8
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 2.5e-117 426.0 311 68.8
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 7.2e-117 424.5 309 67.6
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 2.7e-116 422.5 253 76.7
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 4.6e-116 421.8 298 70.1
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 4.6e-116 421.8 253 75.9
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 7.9e-116 421.0 312 67.3
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.4e-115 420.2 313 66.1
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 3.0e-115 419.1 311 65.6
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 3.9e-115 418.7 322 66.1
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 5.1e-115 418.3 314 65.0
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 5.1e-115 418.3 311 66.9
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 6.7e-115 417.9 313 67.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.5e-114 416.8 253 75.9
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 3.3e-114 415.6 293 68.3
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 3.3e-114 415.6 314 67.2
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 9.7e-114 414.1 230 83.5
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 9.7e-114 414.1 230 83.5
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.8e-112 409.8 313 64.9
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.8e-112 409.8 309 64.7
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.4e-112 409.5 260 73.1
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 3.1e-112 409.1 315 67.9
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 4.1e-112 408.7 248 75.4
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 6.9e-112 407.9 257 73.2
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.2e-111 407.1 309 63.1
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.5e-111 406.8 309 65.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.7e-111 404.4 333 61.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.7e-111 404.4 333 61.9
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.3e-110 403.7 309 65.4
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.1e-109 400.6 311 62.4
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.9e-109 399.8 288 66.7
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 9.4e-109 397.5 230 81.3
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 6.1e-108 394.8 291 64.6
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 7.9e-108 394.4 319 61.8
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.0e-107 394.0 253 73.5
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.0e-107 392.5 251 72.9
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 8.8e-107 391.0 292 64.7
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.0e-106 389.8 312 60.6
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 2.6e-106 389.4 296 67.2
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 4.4e-106 388.7 279 65.2
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 1.3e-105 387.1 275 66.2
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 2.8e-105 386.0 312 63.8
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.4e-104 383.6 272 64.7
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.4e-104 382.9 313 59.7
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.2e-103 380.6 288 66.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.8e-102 375.6 252 67.9
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.5e-101 372.9 289 62.3
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 7.2e-101 371.3 290 62.4
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 9.4e-101 370.9 230 74.3
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 1.0e-99 367.5 282 62.1
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.5e-98 363.6 323 60.7
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.6e-98 362.8 311 63.0
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 9.7e-98 360.9 309 57.3
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.3e-97 360.5 308 57.5
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 1.6e-95 353.6 275 60.7
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 1.7e-94 350.1 322 59.9
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.5e-93 347.1 280 60.7
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 3.2e-93 345.9 321 58.9
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 3.2e-93 345.9 208 75.5
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 4.2e-93 345.5 282 59.9
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 9.1e-88 327.8 290 57.6
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 5.0e-86 322.0 313 54.3
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 9.5e-85 317.8 340 55.9
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 4.1e-80 302.4 246 59.3
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 5.2e-75 285.4 253 58.9
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 2.6e-74 283.1 298 50.3
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 4.9e-73 278.9 197 64.5
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 8.3e-73 278.1 244 54.9
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.0e-71 273.5 192 66.1
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 7.5e-66 255.0 177 70.1
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 6.4e-65 251.9 151 74.2
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 1.9e-64 250.4 205 60.0
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.9e-64 250.4 173 64.2
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 2.5e-53 213.4 173 59.5
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 2.4e-48 196.8 269 40.1
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 5.1e-46 189.1 170 62.9
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 9.6e-45 184.9 245 40.8
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 6.2e-44 182.2 192 53.6
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 2.6e-42 176.8 240 43.3
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 7.6e-42 175.3 162 54.9
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 3.8e-33 146.4 106 60.4
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.4e-32 142.5 99 68.7
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.6e-31 141.0 121 56.2
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 2.3e-30 137.1 93 71.0
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.3e-29 133.3 98 65.3
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.4e-24 117.9 125 49.6
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.4e-24 117.1 150 42.7
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 5.5e-24 115.9 125 48.8
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 9.3e-24 115.2 178 37.6
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.1e-21 108.2 65 75.4
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.6e-20 104.4 137 41.6
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 3.7e-20 103.2 143 42.0
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.2e-18 98.2 58 77.6
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.9e-16 90.9 202 31.7
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-10 71.2 120 35.0
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 3.4e-10 70.1 95 43.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.0e-09 68.6 116 37.1
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-09 68.2 116 36.2
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-09 68.2 159 30.2
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 2.2e-09 67.4 61 52.5
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 3.2e-08 63.5 56 48.2
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 3.2e-08 63.5 50 66.0
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 7.2e-08 62.4 60 51.7
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 4.6e-07 59.7 50 62.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 6.1e-07 59.3 49 61.2
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 7.9e-07 58.9 50 60.0
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 1.0e-06 58.5 50 62.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.3e-06 58.2 41 63.4


User provided reference genes

Program Settings