Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc52.36 Carica papaya HOM05D005301 ORTHO05D006433 1.7e-99 366.3 223 100.0
Ciclev10019136m.g Citrus clementina HOM05D005301 ORTHO05D006433 4.0e-85 318.5 222 88.7
Gorai.008G204700 Gossypium raimondii HOM05D005301 ORTHO05D006433 1.5e-84 316.6 219 85.8
Gohir.A12G188000 Gossypium hirsutum HOM05D005301 ORTHO05D006433 1.7e-83 313.2 219 85.8
Gohir.D12G190800 Gossypium hirsutum HOM05D005301 ORTHO05D006433 4.8e-83 311.6 219 85.8
CiPaw.11G012400 Carya illinoinensis HOM05D005301 ORTHO05D006433 2.4e-82 309.3 221 86.0
QL10p005311 Quercus lobata HOM05D005301 ORTHO05D006433 2.4e-82 309.3 219 88.1
TAR374G1436 Trochodendron aralioides HOM05D005301 ORTHO05D006433 1.2e-81 307.0 221 84.6
Potri.015G090100 Populus trichocarpa HOM05D005301 ORTHO05D006433 1.6e-81 306.6 222 86.9
CsaV3_1G000790 Cucumis sativus L. HOM05D005301 ORTHO05D006433 1.3e-80 303.5 221 83.3
Duzib205G0739 Durio zibethinus HOM05D005301 ORTHO05D006433 1.3e-80 303.5 231 83.1
Sabra15G0112300 Salix brachista HOM05D005301 ORTHO05D006433 1.3e-80 303.5 222 86.0
MELO3C026231.2 Cucumis melo HOM05D005301 ORTHO05D006433 1.7e-80 303.1 222 83.3
Sed0013046 Sechium edule HOM05D005301 ORTHO05D006433 2.2e-80 302.8 221 84.6
Lj1g0016804 Lotus japonicus HOM05D005301 ORTHO05D006433 2.9e-80 302.4 223 84.3
VMungo1309G2118 Vigna mungo HOM05D005301 ORTHO05D006433 3.8e-80 302.0 223 84.3
GSVIVG01007548001 Vitis vinifera HOM05D005301 ORTHO05D006433 3.8e-80 302.0 222 84.2
CANSAT80G2324 Cannabis sativa HOM05D005301 ORTHO05D006433 1.1e-79 300.4 219 84.0
Manes.06G114900 Manihot esculenta HOM05D005301 ORTHO05D006433 2.5e-79 299.3 223 86.5
Phvul.009G169100 Phaseolus vulgaris HOM05D005301 ORTHO05D006433 2.5e-79 299.3 223 83.9
Eucgr.L01339 Eucalyptus grandis HOM05D005301 ORTHO05D006433 4.2e-79 298.5 224 82.6
Lalb_Chr11g0069731 Lupinus albus HOM05D005301 ORTHO05D006433 4.2e-79 298.5 223 83.4
Glyma.04G192600 Glycine max HOM05D005301 ORTHO05D006433 5.5e-79 298.1 223 84.8
TWI39G1189 Tripterygium wilfordii HOM05D005301 ORTHO05D006433 9.4e-79 297.4 221 84.6
arahy.Tifrunner.gnm1.ann1.11HRG0 Arachis hypogaea HOM05D005301 ORTHO05D006433 1.2e-78 297.0 225 83.1
arahy.Tifrunner.gnm1.ann1.86E75A Arachis hypogaea HOM05D005301 ORTHO05D006433 1.2e-78 297.0 225 83.1
Eucgr.B00150 Eucalyptus grandis HOM05D005301 ORTHO05D006433 1.2e-78 297.0 224 82.6
Dinv11108 Davidia involucrata HOM05D005301 ORTHO05D006433 2.7e-78 295.8 222 84.2
Glyma.06G173200 Glycine max HOM05D005301 ORTHO05D006433 3.6e-78 295.4 223 83.9
PGR083G1269 Punica granatum HOM05D005301 ORTHO05D006433 3.6e-78 295.4 219 81.3
MD06G1157400 Malus domestica HOM05D005301 ORTHO05D006433 1.8e-77 293.1 219 81.7
FvH4_5g07300 Fragaria vesca HOM05D005301 ORTHO05D006433 2.3e-77 292.7 220 84.1
FAN18G2536 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.3e-77 292.7 220 84.1
THA.LOC104825004 Tarenaya hassleriana HOM05D005301 ORTHO05D006433 2.3e-77 292.7 223 83.0
TPR.G3295 Trifolium pratense HOM05D005301 ORTHO05D006433 2.3e-77 292.7 223 80.7
CSS0025438 Camellia sinensis var. sinensis HOM05D005301 ORTHO05D006433 3.0e-77 292.4 222 82.4
Oeu011576.1 Olea europaea HOM05D005301 ORTHO05D006433 3.0e-77 292.4 222 78.4
Sc22g0004050 Simmondsia chinensis HOM05D005301 ORTHO05D006433 3.0e-77 292.4 219 76.3
Prupe.5G157400 Prunus persica HOM05D005301 ORTHO05D006433 5.2e-77 291.6 220 83.6
FAN04G2720 Fragaria x ananassa HOM05D005301 ORTHO05D006433 6.8e-77 291.2 220 83.6
Psat6g217880 Pisum sativum HOM05D005301 ORTHO05D006433 8.8e-77 290.8 224 82.6
MBI06_g32519_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 2.0e-76 289.7 221 78.7
FAN13G0064 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.6e-76 289.3 224 82.1
AL8G24360 Arabidopsis lyrata HOM05D005301 ORTHO05D006433 4.4e-76 288.5 226 80.1
RcHm_v2.0_Chr7g0191331 Rosa chinensis HOM05D005301 ORTHO05D006433 4.4e-76 288.5 220 84.1
MD14G1164000 Malus domestica HOM05D005301 ORTHO05D006433 5.7e-76 288.1 219 82.2
Actinidia16194 Actinidia chinensis HOM05D005301 ORTHO05D006433 7.5e-76 287.7 222 81.5
Aqoxy5G03589 Aquilegia oxysepala HOM05D005301 ORTHO05D006433 7.5e-76 287.7 221 81.4
CAN.G352.5 Capsicum annuum HOM05D005301 ORTHO05D006433 7.5e-76 287.7 223 77.6
Migut.I00257 Erythranthe guttata HOM05D005301 ORTHO05D006433 7.5e-76 287.7 222 79.3
Carub.0008s1035 Capsella rubella HOM05D005301 ORTHO05D006433 2.8e-75 285.8 225 79.6
Nn4g22465 Nelumbo nucifera HOM05D005301 ORTHO05D006433 2.8e-75 285.8 221 76.9
BraA03t11987Z Brassica rapa HOM05D005301 ORTHO05D006433 6.3e-75 284.6 225 79.6
CARHR258240 Cardamine hirsuta HOM05D005301 ORTHO05D006433 6.3e-75 284.6 225 80.0
BcaB01g02903 Brassica carinata HOM05D005301 ORTHO05D006433 8.3e-75 284.3 227 79.3
Aa31LG3G5920 Aethionema arabicum HOM05D005301 ORTHO05D006433 1.4e-74 283.5 225 79.1
A03p27760 Brassica napus HOM05D005301 ORTHO05D006433 2.4e-74 282.7 225 79.6
C03p33480 Brassica napus HOM05D005301 ORTHO05D006433 2.4e-74 282.7 225 79.1
Lsat_1_v5_gn_4_78900 Lactuca sativa HOM05D005301 ORTHO05D006433 2.4e-74 282.7 222 77.9
BolC3t15670H Brassica oleracea HOM05D005301 ORTHO05D006433 4.1e-74 282.0 225 79.1
PGSC0003DMG400015238 Solanum tuberosum HOM05D005301 ORTHO05D006433 4.1e-74 282.0 222 76.6
Medtr1g107265 Medicago truncatula HOM05D005301 ORTHO05D006433 5.4e-74 281.6 254 73.2
BcaC01g04820 Brassica carinata HOM05D005301 ORTHO05D006433 7.0e-74 281.2 225 78.7
HanXRQChr09g0272861 Helianthus annuus HOM05D005301 ORTHO05D006433 7.0e-74 281.2 222 81.5
SalBow4G2023 Salvia bowleyana HOM05D005301 ORTHO05D006433 7.0e-74 281.2 220 74.5
Nitab4.5_0003282g0130 Nicotiana tabacum HOM05D005301 ORTHO05D006433 9.2e-74 280.8 222 75.7
AT5G50310 Arabidopsis thaliana HOM05D005301 ORTHO05D006433 1.6e-73 280.0 225 78.7
Sopen03g030520 Solanum pennellii HOM05D005301 ORTHO05D006433 1.6e-73 280.0 222 76.6
Sp6g12390 Schrenkiella parvula HOM05D005301 ORTHO05D006433 2.0e-73 279.6 225 79.1
Cfa018895 Carpinus fangiana HOM05D005301 ORTHO05D006433 3.5e-73 278.9 221 67.9
ClCG06G017670 Citrullus lanatus HOM05D005301 ORTHO05D006433 3.5e-73 278.9 221 67.9
Thhalv10012907m.g Eutrema salsugineum HOM05D005301 ORTHO05D006433 3.5e-73 278.9 225 79.6
PSO782G4848 Papaver somniferum HOM05D005301 ORTHO05D006433 4.5e-73 278.5 210 79.0
Nitab4.5_0010042g0030 Nicotiana tabacum HOM05D005301 ORTHO05D006433 1.0e-72 277.3 222 76.1
ECA232G2312 Erigeron canadensis HOM05D005301 ORTHO05D006433 1.3e-72 276.9 224 81.7
Haze_07279 Corylus avellana HOM05D005301 ORTHO05D006433 1.7e-72 276.6 221 67.9
Solyc03g111390.4 Solanum lycopersicum HOM05D005301 ORTHO05D006433 2.3e-72 276.2 222 75.7
Ca_16092_v3 Cicer arietinum L. HOM05D005301 ORTHO05D006433 2.9e-72 275.8 223 67.7
Hund05643 Selenicereus undatus HOM05D005301 ORTHO05D006433 1.1e-71 273.9 222 79.7
SGA_v2.0_scaffold102G29851 Striga asiatica HOM05D005301 ORTHO05D006433 9.5e-71 270.8 224 78.1
unitig_899.g15425 Utricularia gibba HOM05D005301 ORTHO05D006433 1.2e-70 270.4 220 71.4
PSO063G0990 Papaver somniferum HOM05D005301 ORTHO05D006433 2.1e-70 269.6 204 79.9
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 3.6e-70 268.9 221 78.3
Cc04_g10470 Coffea canephora HOM05D005301 ORTHO05D006433 3.6e-70 268.9 203 83.7
EL10Ac7g18070 Beta vulgaris HOM05D005301 ORTHO05D006433 1.0e-69 267.3 221 75.1
FAN08G2537 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.3e-69 266.2 220 65.9
CDE02G1357 Ceratophyllum demersum HOM05D005301 ORTHO05D006433 4.0e-69 265.4 203 74.9
Lj9A475G62 Lonicera japonica HOM05D005301 ORTHO05D006433 1.2e-68 263.8 222 63.5
Zm00001eb079290 Zea mays HOM05D005301 ORTHO05D006433 4.9e-67 258.5 222 75.2
vmacro19243 Vaccinium macrocarpon HOM05D005301 ORTHO05D006433 8.3e-67 257.7 222 64.0
DCAR_016415 Daucus carota HOM05D005301 ORTHO05D006433 1.1e-66 257.3 221 63.3
Os04g0483600 Oryza sativa ssp. japonica HOM05D005301 ORTHO05D006433 4.6e-65 251.9 222 73.0
Rhsim08G0184700 Rhododendron simsii HOM05D005301 ORTHO05D006433 4.6e-65 251.9 213 62.9
Ah.08g218140 Amaranthus hybridus HOM05D005301 ORTHO05D006433 5.9e-65 251.5 211 73.0
COL.COLO4_09264 Corchorus olitorius HOM05D005301 ORTHO05D006433 2.8e-62 242.7 192 67.2
SEGI_14135 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 2.3e-61 239.6 222 70.3
AUR62001274 Chenopodium quinoa HOM05D005301 ORTHO05D006433 2.0e-60 236.5 197 62.4
SMO339G0058 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.0e-56 222.6 225 51.6
MBI06_g16660_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 4.3e-55 218.8 169 78.1
AagrBONN_evm.TU.Sc2ySwM_344.1825 Anthoceros agrestis HOM05D005301 ORTHO05D006433 1.2e-54 217.2 222 63.1
Pp3c16_5780 Physcomitrium patens HOM05D005301 ORTHO05D006433 2.6e-52 209.5 226 60.6
Peaxi162Scf00089g00721 Petunia axillaris HOM05D005301 ORTHO05D006433 3.4e-52 209.1 169 74.6
BcaC01g04819 Brassica carinata HOM05D005301 ORTHO05D006433 6.0e-49 198.4 222 53.2
Hund05630 Selenicereus undatus HOM05D005301 ORTHO05D006433 2.1e-46 189.9 186 71.5
Mapoly0001s0540 Marchantia polymorpha HOM05D005301 ORTHO05D006433 3.6e-46 189.1 222 60.8
CBR_g40809 Chara braunii HOM05D005301 ORTHO05D006433 4.1e-42 175.6 223 53.4
Thecc.03G122400 Theobroma cacao HOM05D005301 ORTHO05D006433 5.1e-40 168.7 142 72.5
Atru.chr9.1005 Acer truncatum HOM05D005301 ORTHO05D006433 4.7e-38 162.2 142 84.5
AUR62025732 Chenopodium quinoa HOM05D005301 ORTHO05D006433 6.0e-33 145.2 197 43.1
SMO307G0058 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 9.6e-31 137.9 219 37.4
HPP92_004591 Vanilla planifolia HOM05D005301 ORTHO05D006433 2.8e-30 136.3 145 70.3
SMO200G0253 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.1e-29 132.9 220 39.5
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.2e-25 120.9 81 76.5
Lsat_1_v5_gn_9_521 Lactuca sativa HOM05D005301 ORTHO05D006433 6.0e-25 118.6 70 77.1
Lsat_1_v5_gn_2_63001 Lactuca sativa HOM05D005301 ORTHO05D006433 3.9e-24 115.9 70 75.7
SMO089G0014 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.9e-23 113.6 185 39.5
SMO024G0003 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.1e-21 107.8 184 37.5
SMO200G0172 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 9.0e-21 104.8 236 32.6
Actinidia19384 Actinidia chinensis HOM05D005301 ORTHO05D006433 4.5e-20 102.4 117 74.4
SMO200G0119 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.4e-18 97.4 159 36.5
Peaxi162Scf00089g00716 Petunia axillaris HOM05D005301 ORTHO05D006433 4.0e-13 79.3 53 83.0
SMO001G0006 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 3.8e-11 72.8 215 30.7


User provided reference genes

Program Settings