Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc52.138 Carica papaya HOM05D000186 ORTHO05D023282 5.0e-91 337.8 175 100.0
Thecc.01G266700 Theobroma cacao HOM05D000186 ORTHO05D005094 4.7e-25 118.6 134 53.0
Sp1g05510 Schrenkiella parvula HOM05D000186 ORTHO05D005094 2.3e-24 116.3 150 44.0
THA.LOC104815829 Tarenaya hassleriana HOM05D000186 ORTHO05D005094 5.2e-24 115.2 153 45.1
COL.COLO4_05099 Corchorus olitorius HOM05D000186 ORTHO05D005094 8.9e-24 114.4 139 50.4
AL1G16790 Arabidopsis lyrata HOM05D000186 ORTHO05D005094 1.2e-23 114.0 105 52.4
THA.LOC104826256 Tarenaya hassleriana HOM05D000186 ORTHO05D005094 2.0e-23 113.2 140 49.3
Ciclev10019396m.g Citrus clementina HOM05D000186 ORTHO05D005094 3.4e-23 112.5 132 48.5
CANSAT35G1302 Cannabis sativa HOM05D000186 ORTHO05D005094 7.5e-23 111.3 150 44.7
Carub.0001s0610 Capsella rubella HOM05D000186 ORTHO05D005094 1.7e-22 110.2 153 45.1
Thhalv10007109m.g Eutrema salsugineum HOM05D000186 ORTHO05D005094 8.3e-22 107.8 139 43.9
Sc17g0000950 Simmondsia chinensis HOM05D000186 ORTHO05D005094 1.9e-21 106.7 143 43.4
TAR636G0227 Trochodendron aralioides HOM05D000186 ORTHO05D005094 1.9e-21 106.7 135 49.6
BcaB02g06757 Brassica carinata HOM05D000186 ORTHO05D005094 3.2e-21 105.9 103 53.4
BcaC05g24650 Brassica carinata HOM05D000186 ORTHO05D005094 3.2e-21 105.9 141 46.1
Duzib138G1195 Durio zibethinus HOM05D000186 ORTHO05D005094 3.2e-21 105.9 139 46.8
Nn1g02578 Nelumbo nucifera HOM05D000186 ORTHO05D005094 3.2e-21 105.9 107 55.1
Ca_08648_v3 Cicer arietinum L. HOM05D000186 ORTHO05D005094 4.1e-21 105.5 127 48.8
FAN27G0932 Fragaria x ananassa HOM05D000186 ORTHO05D005094 2.7e-20 102.8 96 59.4
Medtr7g096160 Medicago truncatula HOM05D000186 ORTHO05D005094 3.5e-20 102.4 138 44.9
A10p05370 Brassica napus HOM05D000186 ORTHO05D005094 4.6e-20 102.1 153 41.8
Nn3g19518 Nelumbo nucifera HOM05D000186 ORTHO05D005094 4.6e-20 102.1 106 54.7
AT1G06780 Arabidopsis thaliana HOM05D000186 ORTHO05D005094 6.0e-20 101.7 97 52.6
arahy.Tifrunner.gnm1.ann1.L27P26 Arachis hypogaea HOM05D000186 ORTHO05D005094 7.8e-20 101.3 136 41.9
Dinv22473 Davidia involucrata HOM05D000186 ORTHO05D005094 7.8e-20 101.3 133 46.6
FvH4_2g22460 Fragaria vesca HOM05D000186 ORTHO05D005094 7.8e-20 101.3 96 57.3
FAN24G3094 Fragaria x ananassa HOM05D000186 ORTHO05D005094 7.8e-20 101.3 96 57.3
CSS0011315 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D005094 1.0e-19 100.9 98 56.1
FAN15G2099 Fragaria x ananassa HOM05D000186 ORTHO05D005094 1.0e-19 100.9 96 58.3
Gorai.004G219100 Gossypium raimondii HOM05D000186 ORTHO05D005094 1.0e-19 100.9 155 41.9
Dinv34575 Davidia involucrata HOM05D000186 ORTHO05D005094 1.3e-19 100.5 136 46.3
RcHm_v2.0_Chr6g0289401 Rosa chinensis HOM05D000186 ORTHO05D005094 1.3e-19 100.5 136 48.5
Gohir.D08G206900 Gossypium hirsutum HOM05D000186 ORTHO05D005094 2.3e-19 99.8 155 41.3
Phvul.007G177400 Phaseolus vulgaris HOM05D000186 ORTHO05D005094 2.3e-19 99.8 94 55.3
Gohir.A08G188500 Gossypium hirsutum HOM05D000186 ORTHO05D005094 3.9e-19 99.0 96 54.2
ClCG09G007610 Citrullus lanatus HOM05D000186 ORTHO05D005094 6.6e-19 98.2 90 57.8
PGR119G1824 Punica granatum HOM05D000186 ORTHO05D005094 6.6e-19 98.2 133 44.4
CiPaw.03G258200 Carya illinoinensis HOM05D000186 ORTHO05D005094 8.6e-19 97.8 135 49.6
Gohir.D08G070800 Gossypium hirsutum HOM05D000186 ORTHO05D005094 8.6e-19 97.8 136 45.6
VMungo0720G1123 Vigna mungo HOM05D000186 ORTHO05D005094 1.1e-18 97.4 94 54.3
Lj1g0001856 Lotus japonicus HOM05D000186 ORTHO05D005094 1.5e-18 97.1 131 43.5
Gohir.A11G127800 Gossypium hirsutum HOM05D000186 ORTHO05D005094 1.9e-18 96.7 139 45.3
BcaC07g42049 Brassica carinata HOM05D000186 ORTHO05D005094 2.5e-18 96.3 94 51.1
C08p51010 Brassica napus HOM05D000186 ORTHO05D005094 2.5e-18 96.3 94 51.1
MELO3C015774.2 Cucumis melo HOM05D000186 ORTHO05D005094 2.5e-18 96.3 90 54.4
Lalb_Chr01g0019871 Lupinus albus HOM05D000186 ORTHO05D005094 2.5e-18 96.3 137 44.5
Gorai.007G142400 Gossypium raimondii HOM05D000186 ORTHO05D005094 3.3e-18 95.9 142 43.7
Hma1.2p1_0172F.1_g076250 Hydrangea macrophylla HOM05D000186 ORTHO05D005094 3.3e-18 95.9 84 60.7
A09p66790 Brassica napus HOM05D000186 ORTHO05D005094 4.3e-18 95.5 94 48.9
Gohir.D11G133200 Gossypium hirsutum HOM05D000186 ORTHO05D005094 4.3e-18 95.5 142 43.7
Gohir.D11G133250 Gossypium hirsutum HOM05D000186 ORTHO05D005094 4.3e-18 95.5 142 43.7
Gorai.004G074500 Gossypium raimondii HOM05D000186 ORTHO05D023282 4.3e-18 95.5 136 45.6
Haze_24539 Corylus avellana HOM05D000186 ORTHO05D005094 5.6e-18 95.1 154 39.0
BcaC07g42537 Brassica carinata HOM05D000186 ORTHO05D005094 7.3e-18 94.7 94 47.9
Atru.chr5.1587 Acer truncatum HOM05D000186 ORTHO05D005094 1.6e-17 93.6 147 45.6
BolC5t29267H Brassica oleracea HOM05D000186 ORTHO05D005094 1.6e-17 93.6 162 40.1
AL4G25460 Arabidopsis lyrata HOM05D000186 ORTHO05D005094 2.1e-17 93.2 141 46.1
Glyma.19G161500 Glycine max HOM05D000186 ORTHO05D005094 4.7e-17 92.0 140 40.7
MD10G1192000 Malus domestica HOM05D000186 ORTHO05D005094 6.2e-17 91.7 96 53.1
Sp4g13120 Schrenkiella parvula HOM05D000186 ORTHO05D005094 6.2e-17 91.7 145 43.4
CARHR124040 Cardamine hirsuta HOM05D000186 ORTHO05D005094 8.1e-17 91.3 97 52.6
Potri.005G218900 Populus trichocarpa HOM05D000186 ORTHO05D005094 8.1e-17 91.3 154 39.6
TWI12G0140 Tripterygium wilfordii HOM05D000186 ORTHO05D005094 1.1e-16 90.9 177 37.3
Aqoxy5G00341 Aquilegia oxysepala HOM05D000186 ORTHO05D005094 1.4e-16 90.5 103 51.5
vmacro02629 Vaccinium macrocarpon HOM05D000186 ORTHO05D005094 2.3e-16 89.7 168 37.5
Actinidia19984 Actinidia chinensis HOM05D000186 ORTHO05D005094 3.1e-16 89.4 95 52.6
Duzib133G0757 Durio zibethinus HOM05D000186 ORTHO05D005094 3.1e-16 89.4 71 63.4
Manes.05G084900 Manihot esculenta HOM05D000186 ORTHO05D005094 5.2e-16 88.6 151 41.1
PSO210G2660 Papaver somniferum HOM05D000186 ORTHO05D005094 5.2e-16 88.6 152 42.1
Sabra05G0167900 Salix brachista HOM05D000186 ORTHO05D005094 5.2e-16 88.6 99 48.5
Glyma.03G159200 Glycine max HOM05D000186 ORTHO05D005094 6.8e-16 88.2 140 40.0
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 8.9e-16 87.8 140 37.1
AT2G30575 Arabidopsis thaliana HOM05D000186 ORTHO05D005094 8.9e-16 87.8 141 44.0
Gohir.A08G061750 Gossypium hirsutum HOM05D000186 ORTHO05D023282 8.9e-16 87.8 136 42.6
Hund02886 Selenicereus undatus HOM05D000186 ORTHO05D005094 8.9e-16 87.8 85 50.6
VMungo1383G2268 Vigna mungo HOM05D000186 ORTHO05D005094 8.9e-16 87.8 133 44.4
CsaV3_7G027500 Cucumis sativus L. HOM05D000186 ORTHO05D005094 1.2e-15 87.4 108 47.2
Glyma.02G141600 Glycine max HOM05D000186 ORTHO05D005094 1.2e-15 87.4 94 50.0
AUR62032251 Chenopodium quinoa HOM05D000186 ORTHO05D005094 1.5e-15 87.0 88 50.0
Phvul.001G157200 Phaseolus vulgaris HOM05D000186 ORTHO05D005094 3.4e-15 85.9 99 50.5
Rhsim13G0061800 Rhododendron simsii HOM05D000186 ORTHO05D005094 3.4e-15 85.9 146 41.1
PSO832G0818 Papaver somniferum HOM05D000186 ORTHO05D005094 4.4e-15 85.5 153 43.1
BraA10t42801Z Brassica rapa HOM05D000186 ORTHO05D005094 5.8e-15 85.1 174 40.2
GSVIVG01000744001 Vitis vinifera HOM05D000186 ORTHO05D005094 5.8e-15 85.1 103 42.7
Gohir.A07G209500 Gossypium hirsutum HOM05D000186 ORTHO05D005094 7.6e-15 84.7 135 40.0
TWI18G1297 Tripterygium wilfordii HOM05D000186 ORTHO05D005094 9.9e-15 84.3 134 38.8
BraA09t42017Z Brassica rapa HOM05D000186 ORTHO05D005094 1.7e-14 83.6 104 42.3
MBI04_g06859_MAGBIO Magnolia biondii HOM05D000186 ORTHO05D005094 1.7e-14 83.6 91 48.4
Ah.02g111440 Amaranthus hybridus HOM05D000186 ORTHO05D005094 2.2e-14 83.2 118 44.9
Gohir.D07G215600 Gossypium hirsutum HOM05D000186 ORTHO05D005094 2.2e-14 83.2 135 40.0
MD05G1204900 Malus domestica HOM05D000186 ORTHO05D005094 2.2e-14 83.2 96 49.0
EL10Ac5g10459 Beta vulgaris HOM05D000186 ORTHO05D005094 2.9e-14 82.8 165 35.8
Glyma.10G032400 Glycine max HOM05D000186 ORTHO05D005094 2.9e-14 82.8 96 50.0
Rhsim13G0031200 Rhododendron simsii HOM05D000186 ORTHO05D005094 2.9e-14 82.8 143 40.6
Carub.0004s1173 Capsella rubella HOM05D000186 ORTHO05D005094 4.9e-14 82.0 145 42.1
Gorai.001G243400 Gossypium raimondii HOM05D000186 ORTHO05D005094 4.9e-14 82.0 135 39.3
Migut.D00379 Erythranthe guttata HOM05D000186 ORTHO05D005094 6.4e-14 81.6 105 42.9
Oeu058805.1 Olea europaea HOM05D000186 ORTHO05D005094 6.4e-14 81.6 94 47.9
Sed0011195 Sechium edule HOM05D000186 ORTHO05D005094 6.4e-14 81.6 108 46.3
SalBow4G2578 Salvia bowleyana HOM05D000186 ORTHO05D005094 1.1e-13 80.9 94 48.9
BcaC02g07996 Brassica carinata HOM05D000186 ORTHO05D005094 1.4e-13 80.5 139 41.0
C04p59620 Brassica napus HOM05D000186 ORTHO05D005094 1.4e-13 80.5 139 41.0
BolC4t27470H Brassica oleracea HOM05D000186 ORTHO05D005094 1.4e-13 80.5 139 41.0
A04p23320 Brassica napus HOM05D000186 ORTHO05D005094 1.9e-13 80.1 144 39.6
Oeu025796.4 Olea europaea HOM05D000186 ORTHO05D005094 2.4e-13 79.7 105 42.9
Eucgr.B01494 Eucalyptus grandis HOM05D000186 ORTHO05D005094 3.2e-13 79.3 84 48.8
CAN.G551.32 Capsicum annuum HOM05D000186 ORTHO05D005094 9.2e-13 77.8 170 34.1
QL12p042788 Quercus lobata HOM05D000186 ORTHO05D005094 1.6e-12 77.0 140 39.3
Psat3g060120 Pisum sativum HOM05D000186 ORTHO05D005094 2.1e-12 76.6 82 48.8
TAR365G0332 Trochodendron aralioides HOM05D000186 ORTHO05D005094 2.7e-12 76.3 95 46.3
BraA04t17860Z Brassica rapa HOM05D000186 ORTHO05D005094 3.5e-12 75.9 142 37.3
Solyc12g010200.2 Solanum lycopersicum HOM05D000186 ORTHO05D005094 3.5e-12 75.9 156 35.9
arahy.Tifrunner.gnm1.ann1.8S3F40 Arachis hypogaea HOM05D000186 ORTHO05D005094 6.0e-12 75.1 98 43.9
Sopen12g005060 Solanum pennellii HOM05D000186 ORTHO05D005094 6.0e-12 75.1 158 36.1
arahy.Tifrunner.gnm1.ann1.K5JQSH Arachis hypogaea HOM05D000186 ORTHO05D005094 7.8e-12 74.7 98 43.9
Thhalv10016398m.g Eutrema salsugineum HOM05D000186 ORTHO05D005094 3.0e-11 72.8 134 40.3
Nitab4.5_0001478g0070 Nicotiana tabacum HOM05D000186 ORTHO05D005094 3.0e-11 72.8 136 36.0
Medtr1g070490 Medicago truncatula HOM05D000186 ORTHO05D005094 3.9e-11 72.4 103 43.7
HanXRQChr00c0494g0575111 Helianthus annuus HOM05D000186 ORTHO05D005094 1.1e-10 70.9 106 44.3
Sc24g0004330 Simmondsia chinensis HOM05D000186 ORTHO05D005094 1.5e-10 70.5 150 34.0
Lj5g0002763 Lotus japonicus HOM05D000186 ORTHO05D005094 4.3e-10 68.9 138 36.2
Actinidia24943 Actinidia chinensis HOM05D000186 ORTHO05D023282 9.6e-10 67.8 76 47.4
Nitab4.5_0008157g0030 Nicotiana tabacum HOM05D000186 ORTHO05D005094 1.2e-09 67.4 141 36.9
ECA247G1644 Erigeron canadensis HOM05D000186 ORTHO05D005094 1.6e-09 67.0 164 32.3
Cc01_g18780 Coffea canephora HOM05D000186 ORTHO05D005094 4.7e-09 65.5 134 37.3
PSO238G0045 Papaver somniferum HOM05D000186 ORTHO05D005094 4.7e-09 65.5 94 42.6
MSTRG.18292 Avicennia marina HOM05D000186 ORTHO05D005094 6.2e-09 65.1 132 38.6
CDE07G1311 Ceratophyllum demersum HOM05D000186 ORTHO05D005094 6.2e-09 65.1 89 41.6
Ca_09711_v3 Cicer arietinum L. HOM05D000186 ORTHO05D005094 6.2e-09 65.1 140 37.9
Cfa002335 Carpinus fangiana HOM05D000186 ORTHO05D005094 8.1e-09 64.7 155 31.6
Nitab4.5_0001201g0050 Nicotiana tabacum HOM05D000186 ORTHO05D005094 1.4e-08 63.9 141 34.8
ATR0665G395 Amborella trichopoda HOM05D000186 ORTHO05D005094 1.8e-08 63.5 158 28.5
CARHR006470 Cardamine hirsuta HOM05D000186 ORTHO05D005094 1.8e-08 63.5 102 38.2
TPR.G35726 Trifolium pratense HOM05D000186 ORTHO05D005094 2.4e-08 63.2 101 38.6
Psat6g057560 Pisum sativum HOM05D000186 ORTHO05D005094 3.1e-08 62.8 142 31.7
PSO210G5533 Papaver somniferum HOM05D000186 ORTHO05D005094 4.0e-08 62.4 159 34.6
Peaxi162Scf00347g00089 Petunia axillaris HOM05D000186 ORTHO05D005094 4.0e-08 62.4 142 35.9
HanXRQChr10g0281441 Helianthus annuus HOM05D000186 ORTHO05D005094 6.8e-08 61.6 170 35.9
PGSC0003DMG402003179 Solanum tuberosum HOM05D000186 ORTHO05D005094 1.2e-07 60.8 155 32.9
PGSC0003DMG400007896 Solanum tuberosum HOM05D000186 ORTHO05D005094 1.5e-07 60.5 156 35.3
Solyc07g005360.3 Solanum lycopersicum HOM05D000186 ORTHO05D005094 2.0e-07 60.1 148 36.5
TAR629G1855 Trochodendron aralioides HOM05D000186 ORTHO05D001124 3.4e-07 59.3 95 38.9
Sopen07g001420 Solanum pennellii HOM05D000186 ORTHO05D005094 1.3e-06 57.4 145 35.9
SGA_v2.0_scaffold239G43983 Striga asiatica HOM05D000186 ORTHO05D001124 1.3e-06 57.4 132 31.1
CARHR006480 Cardamine hirsuta HOM05D000186 ORTHO05D023282 1.7e-06 57.0 39 66.7
Solyc04g015270.3 Solanum lycopersicum HOM05D000186 ORTHO05D001124 1.7e-06 57.0 154 33.1
PGSC0003DMG400027227 Solanum tuberosum HOM05D000186 ORTHO05D001124 2.9e-06 56.2 98 40.8
CAN.G1116.10 Capsicum annuum HOM05D000186 ORTHO05D005094 6.4e-06 55.1 106 37.7
Cpa.g.sc27.191 Carica papaya HOM05D000186 ORTHO05D001124 8.4e-06 54.7 101 36.6


User provided reference genes

Program Settings