Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc52.118 Carica papaya HOM05D004978 ORTHO05D005621 2.5e-107 392.1 198 100.0
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 8.7e-60 234.2 182 64.3
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 3.8e-55 218.8 173 64.2
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 1.1e-54 217.2 177 62.1
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.8e-52 209.9 183 57.9
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 3.0e-52 209.1 183 57.9
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 8.7e-52 207.6 183 57.4
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 8.7e-52 207.6 182 59.9
GSVIVG01003120001 Vitis vinifera HOM05D004978 ORTHO05D005621 8.7e-52 207.6 182 58.2
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 1.9e-51 206.5 175 61.1
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 4.3e-51 205.3 176 62.5
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 7.4e-51 204.5 174 59.2
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 7.4e-51 204.5 176 60.2
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 9.7e-51 204.1 185 57.8
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 2.2e-50 203.0 176 59.1
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 1.4e-49 200.3 176 60.2
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 1.8e-49 199.9 174 58.0
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 1.8e-49 199.9 177 58.2
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 2.4e-49 199.5 174 57.5
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 3.1e-49 199.1 177 61.0
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 3.1e-49 199.1 174 58.0
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 4.1e-49 198.7 174 58.0
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 1.2e-48 197.2 182 55.5
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 1.2e-48 197.2 176 59.1
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 2.0e-48 196.4 176 60.2
Lj2A1164T58 Lonicera japonica HOM05D004978 ORTHO05D005621 2.0e-48 196.4 175 56.6
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 2.9e-47 192.6 179 57.0
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 8.5e-47 191.0 176 56.8
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 1.1e-46 190.7 159 59.7
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 3.2e-46 189.1 175 55.4
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 4.6e-45 185.3 178 55.1
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 1.4e-44 183.7 174 54.6
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 1.8e-44 183.3 176 55.7
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 2.3e-44 183.0 175 55.4
MD03G1258100 Malus domestica HOM05D004978 ORTHO05D005621 6.7e-44 181.4 153 60.8
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 1.5e-43 180.3 175 55.4
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 3.3e-43 179.1 160 58.1
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 3.3e-43 179.1 169 59.8
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 4.3e-43 178.7 178 55.6
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 5.7e-43 178.3 178 54.5
Sc05g0001300 Simmondsia chinensis HOM05D004978 ORTHO05D005621 5.7e-43 178.3 159 56.6
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 2.8e-42 176.0 161 55.3
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 3.7e-42 175.6 175 55.4
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 3.7e-42 175.6 155 55.5
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 4.8e-42 175.3 159 56.0
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 1.1e-41 174.1 169 55.0
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 1.1e-41 174.1 174 52.3
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 2.4e-41 172.9 166 55.4
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 3.1e-41 172.6 169 54.4
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 3.1e-41 172.6 169 54.4
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 5.3e-41 171.8 174 53.4
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 6.9e-41 171.4 169 55.0
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 6.9e-41 171.4 165 56.4
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 6.9e-41 171.4 187 51.9
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 1.5e-40 170.2 177 53.7
VMungo0720G1640 Vigna mungo HOM05D004978 ORTHO05D005621 1.5e-40 170.2 165 55.2
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 2.0e-40 169.9 165 54.5
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 3.4e-40 169.1 159 55.3
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 3.4e-40 169.1 176 54.5
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 1.0e-39 167.5 175 53.1
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 1.0e-39 167.5 169 53.3
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 1.7e-39 166.8 164 53.7
Carub.0006s1819 Capsella rubella HOM05D004978 ORTHO05D005621 2.2e-39 166.4 158 55.1
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 2.2e-39 166.4 165 52.7
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 3.8e-39 165.6 163 52.1
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 5.0e-39 165.2 177 51.4
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 8.5e-39 164.5 176 50.6
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 1.1e-38 164.1 175 52.6
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 4.2e-38 162.2 177 50.3
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 1.2e-37 160.6 177 49.7
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 2.1e-37 159.8 182 46.2
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 2.1e-37 159.8 165 53.3
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 7.9e-37 157.9 173 50.3
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 2.3e-36 156.4 164 51.2
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 3.9e-36 155.6 188 45.2
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 1.1e-35 154.1 177 47.5
CDE02G4319 Ceratophyllum demersum HOM05D004978 ORTHO05D005621 5.7e-35 151.8 154 50.6
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 5.7e-35 151.8 184 46.2
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 2.8e-34 149.4 181 45.3
AUR62011971 Chenopodium quinoa HOM05D004978 ORTHO05D005621 3.7e-34 149.1 184 46.7
Nitab4.5_0000459g0120 Nicotiana tabacum HOM05D004978 ORTHO05D005621 1.8e-33 146.7 188 43.6
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 1.2e-32 144.1 155 47.7
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 2.6e-32 142.9 194 43.8
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 2.6e-32 142.9 170 46.5
PGSC0003DMG400019310 Solanum tuberosum HOM05D004978 ORTHO05D005621 2.6e-32 142.9 170 46.5
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 4.5e-32 142.1 170 47.1
ATR0665G047 Amborella trichopoda HOM05D004978 ORTHO05D005621 1.9e-30 136.7 151 49.7
HPP92_022057 Vanilla planifolia HOM05D004978 ORTHO05D005621 5.5e-30 135.2 171 45.0
unitig_0.g1132 Utricularia gibba HOM05D004978 ORTHO05D005621 9.4e-30 134.4 192 42.2
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 2.0e-27 126.7 190 44.2
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 8.2e-26 121.3 74 79.7
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 4.5e-24 115.5 69 82.6
TAR636G2873 Trochodendron aralioides HOM05D004978 ORTHO05D005621 2.9e-23 112.8 72 77.8
Glyma.02G144333 Glycine max HOM05D004978 ORTHO05D005621 4.2e-22 109.0 70 72.9
TPR.G34891 Trifolium pratense HOM05D004978 ORTHO05D005621 7.2e-22 108.2 71 71.8
Hund09547 Selenicereus undatus HOM05D004978 ORTHO05D005621 9.4e-22 107.8 69 73.9
Lalb_Chr06g0162781 Lupinus albus HOM05D004978 ORTHO05D005621 9.8e-19 97.8 64 70.3
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 9.8e-19 97.8 96 49.0
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.2e-18 96.7 93 50.5
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.4e-17 94.0 93 48.4
Potri.002G047875 Populus trichocarpa HOM05D004978 ORTHO05D005621 2.7e-16 89.7 107 45.8
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 4.5e-16 89.0 106 42.5
SEGI_31795 Sequoiadendron giganteum HOM05D004978 ORTHO05D005621 1.7e-15 87.0 78 52.6
QL05p031917 Quercus lobata HOM05D000015 ORTHO05D005621 2.2e-15 86.7 106 45.3
Pp3c26_13750 Physcomitrium patens HOM05D004978 ORTHO05D005621 1.5e-14 84.0 110 39.1
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 8.8e-12 74.7 189 27.5
MBI11_g08089_MAGBIO Magnolia biondii HOM05D004978 ORTHO05D005621 5.7e-11 72.0 96 42.7
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 1.7e-10 70.5 85 42.4
Dinv22502 Davidia involucrata HOM05D004978 ORTHO05D005621 1.4e-09 67.4 131 39.7
CSS0038001 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 1.8e-09 67.0 53 66.0
TPR.G21665 Trifolium pratense HOM05D004978 ORTHO05D005621 7.3e-06 55.1 95 36.8


User provided reference genes

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