Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 6.0e-115 417.5 214 100.0
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 3.5e-62 242.3 211 57.8
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 7.7e-62 241.1 195 59.5
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 2.2e-61 239.6 215 57.2
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 6.5e-61 238.0 206 60.2
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 8.5e-61 237.7 211 56.9
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 1.1e-60 237.3 212 55.7
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.5e-60 236.9 196 58.7
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 1.5e-60 236.9 208 55.8
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.5e-60 236.9 215 59.1
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 4.2e-60 235.3 212 56.1
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 5.5e-60 235.0 184 60.9
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.6e-59 233.4 190 58.9
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 6.1e-59 231.5 216 54.2
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.4e-58 230.3 181 59.7
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 1.8e-58 229.9 212 57.1
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 3.0e-58 229.2 198 59.1
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 3.0e-58 229.2 184 59.8
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 2.0e-57 226.5 193 56.5
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 2.0e-57 226.5 215 54.9
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 3.4e-57 225.7 219 55.3
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 3.4e-57 225.7 206 56.3
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.4e-57 225.7 215 54.4
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.4e-57 225.3 215 54.4
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 5.7e-57 224.9 207 55.1
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 2.2e-56 223.0 209 54.1
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 2.8e-56 222.6 214 52.3
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 4.8e-56 221.9 206 56.8
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.4e-55 220.3 191 55.0
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.8e-55 219.9 218 53.7
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 3.1e-55 219.2 214 52.3
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 5.4e-55 218.4 206 58.3
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 7.0e-55 218.0 206 58.3
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.2e-54 217.2 206 57.8
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 2.0e-54 216.5 183 55.7
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.3e-53 213.8 205 54.6
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 1.9e-52 209.9 214 53.3
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 5.5e-52 208.4 204 54.4
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 7.2e-52 208.0 207 47.3
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 7.2e-52 208.0 188 57.4
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 2.1e-51 206.5 208 51.4
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 3.6e-51 205.7 199 48.7
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 4.7e-51 205.3 209 51.7
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 1.4e-50 203.8 204 51.0
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 1.2e-49 200.7 206 47.6
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 1.5e-49 200.3 210 48.1
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 2.0e-49 199.9 204 52.0
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 2.0e-49 199.9 211 51.7
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 2.0e-49 199.9 210 49.5
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 7.5e-49 198.0 211 46.9
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 6.3e-48 194.9 204 47.1
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.1e-47 194.1 203 49.8
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 1.4e-47 193.7 199 50.8
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 2.4e-47 193.0 215 51.6
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 7.0e-47 191.4 194 54.6
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 9.2e-47 191.0 203 48.8
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 1.6e-46 190.3 194 52.1
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 4.5e-46 188.7 218 47.7
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 5.9e-46 188.3 216 46.8
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 5.9e-46 188.3 219 46.1
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 5.9e-46 188.3 212 46.7
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 7.7e-46 188.0 211 48.3
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 1.3e-45 187.2 216 46.3
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.7e-45 186.8 212 46.2
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 5.0e-45 185.3 219 45.2
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 5.0e-45 185.3 219 45.2
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 6.6e-45 184.9 215 52.1
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 8.6e-45 184.5 217 44.7
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 8.6e-45 184.5 219 45.2
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 8.6e-45 184.5 186 48.9
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 4.3e-44 182.2 214 43.9
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 5.6e-44 181.8 219 44.7
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 5.6e-44 181.8 218 46.3
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 7.3e-44 181.4 218 45.4
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 1.2e-43 180.6 210 45.7
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.2e-43 180.6 291 38.1
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.6e-43 180.3 218 45.4
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 3.6e-43 179.1 219 44.3
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 6.1e-43 178.3 219 46.6
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 8.0e-43 177.9 189 48.7
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.8e-42 176.8 211 43.6
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.8e-42 176.8 211 43.6
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 1.8e-42 176.8 203 43.8
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 2.3e-42 176.4 217 43.8
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 2.3e-42 176.4 210 41.9
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 3.0e-42 176.0 201 51.2
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 4.0e-42 175.6 206 45.6
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 5.2e-42 175.3 201 50.7
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.2e-41 174.1 212 42.5
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.0e-41 173.3 175 52.6
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 2.6e-41 172.9 190 47.4
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 8.3e-40 167.9 175 51.4
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 1.2e-38 164.1 186 50.5
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 1.6e-38 163.7 213 42.7
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 2.0e-38 163.3 216 48.6
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 7.3e-36 154.8 206 40.8
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 7.3e-36 154.8 226 41.6
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.2e-32 143.3 156 49.4
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 4.9e-32 142.1 119 58.0
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 9.2e-31 137.9 156 49.4
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.9e-28 130.2 189 39.7
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 7.3e-28 128.3 218 36.2
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 4.0e-26 122.5 118 51.7
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.7e-24 117.1 107 48.6
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 1.4e-23 114.0 204 39.2
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 3.2e-23 112.8 211 36.0
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 4.1e-23 112.5 180 38.9
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 1.6e-22 110.5 180 33.3
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.7e-22 109.8 105 50.5
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 4.6e-22 109.0 82 63.4
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 5.1e-21 105.5 204 36.3
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 6.6e-21 105.1 87 54.0
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 1.6e-14 84.0 165 34.5
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 8.6e-13 78.2 54 64.8
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.9e-12 77.0 135 37.0
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 2.5e-12 76.6 98 43.9
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 1.4e-10 70.9 51 62.7
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 1.5e-09 67.4 49 61.2
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 3.8e-08 62.8 52 57.7


User provided reference genes

Program Settings