Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 0.0e+00 1097.4 556 100.0
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 1.4e-150 537.3 558 54.3
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.7e-148 530.4 552 54.2
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 4.1e-147 525.8 556 52.3
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.2e-146 524.2 556 52.3
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.1e-144 517.7 525 53.5
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 2.5e-144 516.5 548 51.8
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 9.4e-144 514.6 546 53.7
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 2.7e-143 513.1 564 50.5
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 8.8e-142 508.1 523 54.3
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 1.1e-141 507.7 522 52.9
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 4.4e-141 505.8 561 51.3
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 2.4e-139 500.0 567 50.1
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 9.1e-139 498.0 558 50.9
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 1.2e-138 497.7 567 49.7
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 1.6e-138 497.3 570 49.6
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 4.5e-138 495.7 564 50.7
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.5e-136 490.0 554 51.4
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 7.2e-136 488.4 556 51.4
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 2.1e-135 486.9 567 48.7
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 4.7e-135 485.7 558 51.4
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 6.1e-135 485.3 555 51.9
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.8e-132 476.5 561 50.6
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 6.3e-132 475.3 572 49.3
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 1.8e-131 473.8 555 49.9
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 3.0e-126 456.4 563 48.3
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 8.8e-126 454.9 561 47.6
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.3e-124 451.1 605 45.5
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 1.7e-124 450.7 529 49.3
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 4.1e-123 446.0 562 47.5
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 4.1e-123 446.0 524 49.6
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 5.4e-123 445.7 549 47.9
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 9.1e-123 444.9 483 52.2
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 2.0e-122 443.7 548 46.7
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 2.3e-121 440.3 521 49.1
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 1.5e-120 437.6 555 48.8
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.1e-119 433.7 572 45.8
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 8.0e-119 431.8 558 45.9
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 3.4e-117 426.4 518 48.8
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 7.5e-117 425.2 557 45.6
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 1.1e-115 421.4 551 45.0
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 1.8e-115 420.6 570 45.4
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 1.6e-114 417.5 557 45.2
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.9e-112 410.6 561 44.7
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 8.0e-111 405.2 464 48.3
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.0e-110 404.8 523 45.5
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 2.2e-108 397.1 522 44.1
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 6.4e-108 395.6 586 42.5
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 3.5e-106 389.8 529 45.7
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 7.8e-106 388.7 584 42.1
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 9.5e-104 381.7 499 44.7
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 1.2e-103 381.3 483 46.0
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 2.8e-103 380.2 543 44.9
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.8e-102 377.5 535 44.9
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.8e-102 377.5 520 46.3
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 3.4e-101 373.2 566 42.2
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 7.5e-101 372.1 499 44.5
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 1.7e-100 370.9 576 42.9
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 3.7e-100 369.8 557 42.4
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.2e-98 364.8 550 44.2
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 1.2e-98 364.8 529 43.9
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 3.5e-98 363.2 541 44.2
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 1.0e-97 361.7 521 43.4
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 3.0e-97 360.1 541 44.0
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 6.6e-97 359.0 537 46.0
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 7.3e-96 355.5 502 43.2
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 2.8e-95 353.6 309 59.2
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 5.2e-94 349.4 509 43.0
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 4.4e-93 346.3 522 42.1
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.8e-93 345.9 343 54.8
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 7.5e-93 345.5 547 41.9
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.9e-92 343.6 511 41.5
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 4.9e-92 342.8 511 41.7
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 8.3e-92 342.0 521 41.1
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 1.1e-91 341.7 374 48.7
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.4e-91 340.5 521 41.7
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 3.2e-91 340.1 505 41.8
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 3.9e-89 333.2 474 44.1
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 7.3e-88 328.9 406 46.3
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 3.6e-87 326.6 531 39.5
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 3.6e-87 326.6 531 39.5
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.1e-86 323.6 410 48.3
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 2.7e-82 310.5 463 41.9
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 3.9e-81 306.6 383 45.7
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 8.1e-79 298.9 520 38.3
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 6.4e-76 289.3 284 57.4
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 1.2e-69 268.5 629 33.5
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.3e-68 265.0 357 45.9
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 1.3e-65 255.0 491 37.9
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 4.5e-61 240.0 309 50.5
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 4.3e-56 223.4 301 44.5
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.3e-55 221.9 560 32.1
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 1.4e-54 218.4 401 37.2
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 6.5e-52 209.5 560 31.2
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.4e-51 208.4 300 43.0
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 7.1e-51 206.1 568 30.5
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.6e-50 204.9 215 47.9
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 3.5e-50 203.8 383 33.9
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 6.0e-50 203.0 321 42.7
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 3.9e-49 200.3 596 28.9
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 6.7e-49 199.5 121 86.8
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 8.7e-49 199.1 160 67.5
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 1.5e-48 198.4 143 72.7
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 4.1e-46 190.3 135 73.3
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 9.0e-46 189.1 266 45.1
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 2.1e-42 177.9 279 42.7
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 5.7e-40 169.9 264 39.8
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 2.0e-37 161.4 132 63.6
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 8.5e-36 156.0 99 80.8
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.6e-34 151.8 131 59.5
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 3.4e-29 134.0 149 48.3
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 3.2e-27 127.5 91 71.4
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 4.7e-26 123.6 121 53.7
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 4.4e-24 117.1 112 60.7
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 4.4e-24 117.1 305 27.5
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 1.1e-22 112.5 101 60.4
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 1.8e-22 111.7 79 72.2
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.7e-15 87.4 272 33.5
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.4e-14 85.5 144 41.0
C05p62940 Brassica napus HOM05D000005 ORTHO05D000449 2.4e-14 84.7 125 46.4
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 2.7e-10 71.2 48 79.2
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.4e-08 64.3 33 90.9
CBR_g8884 Chara braunii HOM05D006063 ORTHO05D000023 2.8e-07 61.2 53 54.7
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 3.7e-07 60.8 40 77.5


User provided reference genes

Program Settings