Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 0.0e+00 1594.7 843 100.0
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1090.5 825 70.2
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 1078.5 834 69.8
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 1077.4 813 70.7
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 3.3e-310 1068.1 824 68.8
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 3.7e-309 1064.7 833 69.1
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.4e-308 1062.8 813 69.7
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 1.2e-307 1059.7 837 67.9
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 2.6e-307 1058.5 813 69.7
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 2.9e-306 1055.0 813 69.6
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 3.8e-306 1054.7 826 68.0
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 2.7e-304 1048.5 813 69.2
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 2.9e-298 1028.5 825 66.5
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 5.7e-294 1014.2 813 67.0
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 9.8e-294 1013.4 825 65.5
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 6.5e-290 1000.7 825 64.7
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 1.2e-288 996.5 828 64.5
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 1.6e-288 996.1 825 65.0
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 2.3e-287 992.3 829 63.6
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 8.8e-287 990.3 829 63.7
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 5.7e-286 987.6 813 66.2
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 2.2e-285 985.7 812 64.9
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 4.1e-284 981.5 845 62.6
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 1.2e-283 979.9 846 61.1
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 1.0e-282 976.9 825 62.5
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.5e-281 973.0 827 62.6
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.0e-279 966.8 825 62.5
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 4.0e-279 964.9 829 62.6
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 7.5e-278 960.7 830 62.9
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.7e-277 959.5 830 62.3
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 5.4e-276 954.5 825 61.2
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.6e-275 953.0 840 62.0
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 2.0e-275 952.6 813 62.5
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.7e-275 952.2 830 62.5
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 1.3e-274 949.9 813 61.6
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.7e-274 949.5 840 61.9
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 1.7e-274 949.5 813 62.1
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 3.0e-274 948.7 813 62.4
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 5.0e-274 948.0 829 61.8
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 5.0e-274 948.0 813 62.0
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 8.6e-274 947.2 825 60.8
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 4.7e-272 941.4 827 60.1
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 1.4e-271 939.9 813 61.5
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 1.4e-271 939.9 824 59.2
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.2e-271 937.9 830 62.0
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 6.8e-271 937.6 813 60.5
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 6.8e-271 937.6 813 61.7
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 6.8e-271 937.6 824 59.7
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.2e-270 936.8 830 61.9
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 2.0e-270 936.0 825 59.8
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 3.4e-270 935.3 830 59.5
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 5.8e-270 934.5 813 61.5
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 5.8e-270 934.5 813 61.3
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 7.5e-270 934.1 813 61.0
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 7.5e-270 934.1 825 60.0
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 2.2e-269 932.6 813 60.9
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 2.2e-269 932.6 827 60.6
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 6.4e-269 931.0 827 59.4
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 5.4e-268 927.9 825 59.9
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 1.6e-267 926.4 813 60.6
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 2.0e-267 926.0 813 60.8
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 2.7e-267 925.6 826 59.3
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 4.6e-267 924.9 813 60.3
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 6.0e-267 924.5 824 60.4
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 1.0e-266 923.7 825 60.6
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 1.9e-265 919.5 825 59.3
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 4.3e-265 918.3 861 58.0
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 5.6e-265 917.9 825 60.2
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 9.5e-265 917.1 823 59.5
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 2.8e-264 915.6 825 60.1
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 2.8e-264 915.6 825 60.1
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 2.3e-263 912.5 838 58.8
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 2.6e-262 909.1 825 59.0
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 3.4e-262 908.7 813 60.3
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 5.8e-262 907.9 788 63.1
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.4e-260 903.3 848 57.3
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.4e-260 903.3 848 57.3
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 2.7e-259 899.0 886 57.1
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 3.9e-258 895.2 891 54.7
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 2.8e-256 889.0 855 56.3
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 1.8e-255 886.3 813 59.4
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.4e-254 882.1 843 59.3
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 5.4e-252 874.8 888 54.5
Haze_04476 Corylus avellana HOM05D003193 ORTHO05D004924 4.7e-248 861.7 608 72.5
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 6.9e-247 857.8 816 56.4
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 1.5e-246 856.7 844 54.3
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 4.4e-246 855.1 816 56.0
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 4.4e-246 855.1 812 56.9
vmacro19973 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 6.6e-242 841.3 726 61.2
Lj2A47G48 Lonicera japonica HOM05D003193 ORTHO05D004924 3.7e-232 808.9 686 61.8
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 1.1e-223 780.8 863 48.9
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.8e-207 726.9 761 53.1
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 1.2e-190 671.0 781 47.1
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 5.0e-189 665.6 558 65.2
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 2.5e-188 663.3 774 49.7
ATR0787G183 Amborella trichopoda HOM05D003193 ORTHO05D004924 4.3e-164 582.8 616 51.3
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 9.5e-156 555.1 566 55.5
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 1.5e-153 547.7 871 37.5
SEGI_25764 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 3.4e-145 520.0 606 45.7
unitig_37.g12281 Utricularia gibba HOM05D003193 ORTHO05D004924 1.1e-138 498.4 731 41.9
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 1.6e-134 484.6 823 37.7
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 5.1e-117 426.4 844 34.4
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 2.1e-107 394.4 867 34.9
Actinidia06818 Actinidia chinensis HOM05D003193 ORTHO05D004924 5.3e-106 389.8 434 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 3.9e-85 320.5 671 32.6
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 1.2e-68 265.8 365 46.8
SHI15643 Sapria himalayana HOM05D003193 ORTHO05D004924 2.0e-57 228.4 284 46.8
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 5.9e-57 226.9 191 66.0
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 3.2e-42 177.9 182 56.0
Os02g0538400 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 4.6e-41 174.1 234 41.9
MD04G1234100 Malus domestica HOM05D003193 ORTHO05D004924 6.0e-41 173.7 113 73.5
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 1.5e-39 169.1 180 53.9
CSS0034895 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D016156 4.3e-39 167.5 135 64.4
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.0e-36 158.7 166 53.0
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 3.9e-32 144.4 228 42.1
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 2.3e-29 135.2 165 52.1
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 2.0e-28 132.1 149 54.4
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 9.2e-26 123.2 125 60.8
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 6.6e-24 117.1 133 56.4
Actinidia11722 Actinidia chinensis HOM05D003193 ORTHO05D004924 8.1e-22 110.2 76 68.4
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 2.4e-21 108.6 864 22.5
Zm00001eb208170 Zea mays HOM05D003193 ORTHO05D026302 2.1e-17 95.5 122 46.7
Actinidia26098 Actinidia chinensis HOM05D003193 ORTHO05D026302 1.3e-16 92.8 173 42.2
MD04G1234200 Malus domestica HOM05D003193 ORTHO05D004924 1.3e-16 92.8 71 66.2
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 3.0e-16 91.7 164 42.1
MD08G1086100 Malus domestica HOM05D003193 ORTHO05D004924 4.0e-13 81.3 75 53.3
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 2.2e-11 75.5 239 29.3
SEGI_16883 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 3.8e-11 74.7 86 43.0
SHI15645 Sapria himalayana HOM05D003193 ORTHO05D004924 8.4e-11 73.6 77 49.4
RcHm_v2.0_Chr5g0043171 Rosa chinensis HOM05D003193 ORTHO05D004924 7.1e-10 70.5 58 62.1
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 9.3e-10 70.1 66 54.5
Psat4g179720 Pisum sativum HOM05D000104 ORTHO05D006241 2.1e-09 68.9 72 54.2
Actinidia11721 Actinidia chinensis HOM05D003193 ORTHO05D004924 7.3e-07 60.5 66 53.0
Oeu049759.1 Olea europaea HOM05D000203 ORTHO05D000135 9.6e-07 60.1 57 56.1


User provided reference genes

Program Settings