Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 8.4e-135 483.8 262 100.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.3e-127 459.9 262 92.7
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 92.7
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 92.7
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 2.4e-126 455.7 262 92.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.4e-126 455.7 262 91.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.2e-126 455.3 262 92.4
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 7.1e-126 454.1 262 92.4
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 9.3e-126 453.8 262 92.0
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 91.6
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 91.6
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 91.6
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 91.6
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.6e-125 453.0 262 91.6
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 91.2
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.8e-125 450.7 262 90.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.7e-124 449.5 262 90.8
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 90.5
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 3.0e-124 448.7 262 91.2
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 6.6e-124 447.6 262 90.1
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 91.2
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.3e-123 444.9 262 90.1
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 90.1
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 89.7
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.6e-122 443.0 261 88.9
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 90.1
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 90.1
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 88.9
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 89.7
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 88.5
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 88.2
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.4e-121 439.9 262 87.0
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 87.0
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 88.2
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 3.1e-121 438.7 263 89.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 87.8
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 89.3
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 4.0e-121 438.3 262 87.0
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 87.4
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 88.9
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.0
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 86.3
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 88.9
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.6e-120 435.6 263 88.6
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 88.5
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 88.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 85.5
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 88.5
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 7.6e-120 434.1 263 88.2
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 87.4
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 88.2
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 87.0
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 86.6
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 85.5
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 85.1
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 88.2
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 87.8
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 8.4e-119 430.6 259 89.2
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 84.7
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.5
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 87.4
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 87.4
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 87.4
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.1
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 86.3
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 85.9
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.1
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 84.4
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 86.3
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 87.0
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.0
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 85.5
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 88.2
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 85.5
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.7
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.0e-116 423.7 263 85.6
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 85.5
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.4
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.7
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.7
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.7
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.1e-115 420.2 262 86.3
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.9e-115 419.5 264 84.1
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 85.1
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 5.6e-115 417.9 264 84.5
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 7.4e-115 417.5 253 86.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 2.1e-114 416.0 264 84.1
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.2e-112 410.2 247 89.1
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 84.4
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 84.0
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 2.6e-112 409.1 247 88.7
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.4e-112 408.7 262 80.9
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 9.9e-112 407.1 262 83.2
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.7e-111 406.4 263 83.3
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 4.9e-111 404.8 246 88.6
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 4.9e-111 404.8 263 81.0
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 81.7
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 4.2e-110 401.7 263 84.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 9.3e-110 400.6 263 83.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 4.6e-109 398.3 260 83.1
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 80.9
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 79.4
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.0e-108 395.6 264 83.3
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.4
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.1e-107 393.7 270 78.5
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.4
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 79.0
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.0
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.0
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.0
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 78.6
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 78.6
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 78.6
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 7.4e-107 391.0 262 79.0
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 79.1
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.8e-106 389.0 262 78.2
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 79.1
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 79.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 6.2e-106 387.9 263 81.4
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 6.2e-106 387.9 263 82.5
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 2.6e-104 382.5 270 75.9
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.7e-103 379.8 248 81.9
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.9e-103 379.0 263 79.8
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.9e-103 379.0 264 80.7
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.5e-101 372.1 262 77.5
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.0e-100 369.0 262 77.5
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.1e-99 367.1 249 77.1
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 3.7e-98 362.1 218 88.5
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 3.8e-95 352.1 241 80.5
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 5.0e-95 351.7 210 88.1
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.5e-95 350.9 234 79.1
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 7.2e-94 347.8 214 87.4
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.7e-93 345.9 263 69.6
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.8e-92 343.2 226 79.2
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 6.7e-92 341.3 262 72.1
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.8e-90 335.1 263 67.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.4e-89 333.6 223 76.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.7e-87 326.6 218 78.0
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 6.3e-82 308.1 247 70.0
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.1e-81 305.8 251 69.3
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.1e-81 305.8 267 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.4e-78 297.0 237 66.2
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.2e-78 295.8 236 64.0
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 6.1e-77 291.6 204 77.5
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 9.7e-75 284.3 253 64.0
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.2e-72 277.3 208 70.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.3e-71 273.9 263 60.8
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.8e-71 272.3 262 63.7
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 5.5e-70 268.5 270 58.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 4.1e-65 252.3 211 64.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.2e-62 242.3 235 62.6
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 7.0e-57 224.9 130 86.9
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.0e-56 223.4 244 52.5
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.8e-53 213.0 120 92.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.3e-50 204.1 244 49.6
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 8.3e-50 201.4 138 79.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.5e-46 189.9 179 61.5
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.1e-45 186.8 118 82.2
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.6e-37 160.6 141 66.0
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.2e-37 158.7 191 52.4
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 4.3e-30 136.0 96 71.9
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.9e-25 120.6 69 92.8


User provided reference genes

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