Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 2248.8 1130 100.0
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1373.2 1101 62.4
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1371.7 1131 62.6
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1350.1 1144 61.5
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1340.5 1147 60.9
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1318.9 1139 59.9
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1312.4 1134 60.8
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1302.7 1073 61.2
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1299.6 1051 61.5
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1295.4 1043 61.4
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1291.6 1138 60.6
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1291.2 1106 60.7
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1284.2 1127 58.7
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1281.2 1058 62.0
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1272.3 1085 59.4
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1265.0 1127 58.8
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1258.0 1038 61.2
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1252.7 1034 60.8
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1247.3 1185 55.5
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1242.3 1045 60.0
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1239.6 1030 61.1
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1236.9 1018 60.9
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1236.5 1057 59.2
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1233.4 1061 59.4
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1232.2 1068 58.4
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1227.2 1168 57.4
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1226.1 1100 57.2
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1218.0 1132 56.3
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1216.1 1130 56.0
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1210.7 1142 57.3
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1207.6 1122 56.1
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1207.2 1071 57.0
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1205.3 1015 59.3
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1205.3 1015 59.3
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1205.3 1069 57.1
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1204.9 980 60.9
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1204.5 1124 56.2
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1204.5 1143 56.9
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1203.3 1130 55.7
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1201.8 1121 56.0
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1190.3 1144 56.0
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1182.5 1042 57.7
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1176.8 1033 58.2
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1174.1 1124 54.7
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1173.3 1039 57.4
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1169.8 1118 54.5
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1167.1 1069 57.3
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1159.4 1125 54.8
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1158.7 1116 54.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1151.3 964 60.2
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1151.0 1052 56.8
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1149.4 1072 56.7
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1134.4 1047 55.6
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1127.1 1132 52.7
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1123.6 1063 54.8
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1105.1 922 60.3
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1098.6 1158 51.3
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 0.0e+00 1090.9 897 60.5
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1087.4 1026 54.6
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1086.6 1024 54.1
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1082.4 882 61.7
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 5.4e-311 1071.2 1096 52.2
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 1.2e-310 1070.1 1014 54.6
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.5e-310 1069.7 1051 52.8
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 2.6e-310 1068.9 900 59.7
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 3.4e-310 1068.5 939 58.1
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 5.9e-310 1067.8 1136 52.1
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.5e-305 1052.4 1089 49.8
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 4.3e-305 1051.6 1029 51.2
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 7.4e-305 1050.8 1122 50.6
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.4e-300 1036.6 1019 52.6
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 4.3e-297 1025.0 1030 49.9
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.0e-293 1013.8 1062 49.7
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.3e-293 1013.4 1050 50.2
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 1.1e-292 1010.4 1149 48.7
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 2.7e-283 979.2 875 58.7
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 4.1e-279 965.3 879 56.5
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.2e-277 959.5 877 58.2
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 3.8e-277 958.7 1167 44.9
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 1.9e-276 956.4 772 62.8
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.8e-269 932.2 1071 46.4
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.8e-266 923.3 1086 45.6
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 6.8e-258 894.8 1134 44.9
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.3e-253 879.8 700 63.1
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 6.1e-251 871.7 768 59.1
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 1.0e-250 870.9 1109 45.1
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 9.5e-236 821.2 900 49.3
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.3e-229 800.0 1001 43.6
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.8e-226 790.4 673 60.2
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 2.7e-214 750.0 700 55.9
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 9.3e-207 724.9 1034 39.7
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 8.7e-205 718.4 1068 40.4
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.1e-202 711.4 747 51.7
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 4.6e-198 696.0 594 59.6
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.1e-197 692.6 505 68.3
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.5e-177 627.9 446 66.1
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.5e-164 584.7 654 48.6
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 9.1e-154 548.9 548 51.1
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 2.4e-130 471.1 356 64.3
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.3e-117 427.9 405 57.8
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 7.3e-111 406.4 347 55.6
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 6.6e-104 383.3 331 55.6
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.0e-84 318.5 218 69.7
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.1e-80 303.9 1015 26.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.1e-74 286.2 226 61.5
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.2e-73 282.7 219 63.0
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 1.6e-73 282.3 335 42.7
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.4e-64 252.7 266 49.6
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 2.8e-62 245.0 206 56.8
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.4e-60 238.0 357 40.6
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 1.2e-57 229.6 189 59.3
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.1e-57 228.8 179 65.4
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 6.7e-56 223.8 179 63.7
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.7e-55 219.9 179 63.1
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.8e-53 215.7 182 59.9
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-45 188.7 130 70.8
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.6e-41 176.0 524 26.5
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.6e-39 168.7 208 41.3
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 4.5e-36 157.9 115 62.6
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.9e-35 155.2 1098 22.0
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.2e-33 149.8 154 46.1
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.0e-32 146.7 137 51.8
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.2e-32 144.4 389 28.3
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.0e-31 142.5 457 23.0
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.7e-30 139.4 115 53.0
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.8e-30 138.7 162 48.8
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 4.9e-30 137.9 126 51.6
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 1.1e-29 136.7 130 49.2
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.8e-25 122.1 138 50.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 3.2e-21 108.6 84 59.5
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.6e-20 106.3 92 50.0
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 1.6e-20 106.3 84 60.7
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.6e-20 104.8 338 27.5
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 4.6e-20 104.8 84 56.0
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 6.2e-17 94.4 77 57.1
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.1e-16 93.6 101 47.5
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.6e-15 89.0 421 22.6
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 6.4e-14 84.3 59 69.5
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.4e-13 83.2 370 23.2
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.9e-13 82.8 59 67.8
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.4e-13 82.4 66 65.2
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 3.2e-13 82.0 308 25.6
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.4e-13 81.3 229 25.8
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.7e-12 79.0 399 24.1
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.9e-10 72.8 78 52.6
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 4.3e-10 71.6 128 39.8
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.6e-09 68.6 424 21.5
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.4e-07 61.6 53 54.7
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 5.8e-07 61.2 109 39.4
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.2e-06 59.3 74 44.6


User provided reference genes

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