Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 0.0e+00 1338.2 691 100.0
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 2.5e-215 752.7 703 59.2
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 4.3e-215 751.9 675 61.8
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 2.8e-214 749.2 691 60.9
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 6.9e-213 744.6 692 60.1
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 7.9e-209 731.1 692 60.1
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 1.7e-206 723.4 696 58.0
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 9.1e-205 717.6 696 58.5
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 8.5e-203 711.1 693 58.0
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 3.6e-201 705.7 691 58.3
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 2.3e-200 703.0 694 56.9
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 2.3e-200 703.0 675 60.6
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 2.3e-200 703.0 679 57.1
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 2.6e-196 689.5 676 57.7
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 7.7e-196 688.0 699 57.5
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 7.7e-196 688.0 690 57.0
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 6.5e-195 684.9 861 49.0
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 6.5e-195 684.9 682 58.1
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 6.1e-193 678.3 696 57.2
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.8e-190 669.5 688 55.8
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 3.7e-190 669.1 682 55.7
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 4.8e-190 668.7 696 56.6
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 4.1e-189 665.6 647 57.5
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 9.1e-189 664.5 698 55.6
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.2e-188 664.1 697 55.5
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.6e-188 663.7 698 55.3
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.1e-186 657.5 682 55.3
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.2e-186 656.0 686 55.2
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 7.2e-186 654.8 688 55.5
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 9.4e-186 654.4 695 54.7
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 1.0e-184 651.0 692 53.3
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 1.3e-182 644.0 689 54.6
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.4e-181 639.8 670 55.1
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 2.4e-181 639.8 693 55.1
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 3.1e-181 639.4 686 54.7
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 1.6e-180 637.1 686 53.4
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 2.0e-180 636.7 687 53.4
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 2.9e-179 632.9 682 54.3
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 6.5e-179 631.7 698 53.9
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 4.2e-178 629.0 695 53.4
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 6.1e-177 625.2 688 52.8
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 9.8e-175 617.8 694 52.3
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 3.7e-174 615.9 683 53.1
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 4.9e-174 615.5 692 51.4
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.8e-173 613.6 676 54.1
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 2.4e-173 613.2 712 53.1
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 9.2e-173 611.3 697 53.2
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 7.8e-172 608.2 702 51.7
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.5e-170 604.0 688 52.3
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 5.6e-170 602.1 756 49.2
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 9.5e-170 601.3 632 55.1
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 1.6e-169 600.5 645 55.2
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.4e-168 597.4 742 49.5
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 1.4e-168 597.4 683 52.1
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 3.0e-168 596.3 693 52.8
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 3.0e-168 596.3 695 51.4
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.7e-166 590.5 733 48.8
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 3.7e-166 589.3 668 51.3
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.8e-165 587.0 674 52.2
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.6e-164 583.9 708 50.4
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.6e-164 583.9 693 50.8
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 2.0e-164 583.6 673 52.6
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 2.0e-164 583.6 673 52.6
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 6.0e-164 582.0 679 52.6
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 7.8e-164 581.6 684 52.9
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 2.3e-163 580.1 590 56.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 3.0e-163 579.7 627 53.4
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.5e-162 577.4 673 52.0
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.9e-162 577.0 728 49.3
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 2.5e-162 576.6 691 50.4
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 7.3e-162 575.1 673 52.0
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 7.3e-162 575.1 720 49.3
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 4.7e-161 572.4 708 49.9
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 1.8e-160 570.5 679 51.4
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 2.3e-160 570.1 700 50.6
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 3.1e-160 569.7 673 51.9
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 2.6e-159 566.6 673 51.6
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 4.4e-159 565.8 700 49.9
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 7.5e-159 565.1 681 49.2
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 9.8e-159 564.7 694 50.3
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 4.1e-157 559.3 727 48.1
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.2e-156 557.8 679 51.0
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 7.8e-156 555.1 679 50.4
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 6.6e-155 552.0 679 50.2
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.5e-154 550.8 688 50.0
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.9e-154 550.4 693 48.5
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.6e-153 547.4 702 49.3
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.1e-153 547.0 716 48.6
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.1e-152 544.7 602 53.3
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 5.2e-152 542.3 646 50.6
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 7.5e-151 538.5 681 50.4
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 4.9e-150 535.8 689 50.4
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.9e-149 533.9 684 48.2
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.4e-149 533.5 695 48.9
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 3.5e-148 529.6 683 50.2
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 7.8e-148 528.5 690 48.3
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 6.6e-147 525.4 708 47.3
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 4.0e-144 516.2 708 46.9
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 5.2e-144 515.8 738 45.5
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 4.9e-142 509.2 611 49.8
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 6.4e-142 508.8 625 49.1
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 2.4e-141 506.9 698 47.4
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 9.2e-141 505.0 699 45.6
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.2e-140 504.6 673 47.3
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 2.1e-137 493.8 678 46.8
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 6.9e-136 488.8 692 45.7
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.6e-132 477.6 788 42.9
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 1.3e-129 468.0 698 45.4
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.2e-124 451.4 622 45.7
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 7.9e-124 448.7 641 43.4
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 2.4e-120 437.2 700 43.1
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 2.6e-119 433.7 644 43.8
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 5.1e-115 419.5 618 42.7
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 1.5e-114 417.9 695 41.9
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 9.6e-114 415.2 444 56.3
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 1.9e-109 401.0 683 42.0
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.2e-103 381.7 505 47.5
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 1.2e-92 345.1 735 35.2
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.7e-92 344.0 628 38.4
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.9e-85 321.2 600 38.2
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 4.8e-73 280.0 725 32.7
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 1.6e-63 248.4 678 31.6
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 2.9e-62 244.2 665 31.9
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 4.4e-58 230.3 682 31.8
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.8e-51 208.4 312 42.6
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.6e-47 195.3 225 53.3
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.9e-46 190.7 182 58.2
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 6.2e-44 183.3 173 58.4
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.2e-39 169.1 226 46.5
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 1.2e-39 169.1 498 31.5
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 8.3e-33 146.4 791 25.9
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 7.1e-32 143.3 132 55.3
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 5.2e-27 127.1 131 56.5
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.2e-25 121.7 98 65.3
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 3.5e-23 114.4 678 25.1
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 2.3e-22 111.7 105 53.3
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 5.3e-11 73.9 183 31.7
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 1.5e-10 72.4 134 41.0
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 1.5e-10 72.4 134 41.0
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 1.5e-10 72.4 134 41.0
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 1.3e-09 69.3 127 39.4
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 1.0e-06 59.7 59 49.2
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.3e-06 58.5 71 50.7


User provided reference genes

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