Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 3.7e-272 941.0 502 100.0
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 3.2e-215 751.9 502 81.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 2.0e-214 749.2 504 79.2
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 3.3e-212 741.9 502 79.1
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-211 739.6 503 78.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 3.6e-211 738.4 491 80.2
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.3e-210 735.7 503 78.3
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.1e-210 735.3 503 79.3
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 5.2e-210 734.6 505 79.2
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 6.8e-210 734.2 506 77.9
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 8.9e-210 733.8 487 79.9
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 5.8e-209 731.1 504 78.0
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 5.8e-209 731.1 503 78.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 7.5e-209 730.7 504 77.4
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.7e-208 729.6 503 77.7
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.9e-208 728.8 503 78.7
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.9e-207 726.1 492 78.9
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.9e-207 726.1 502 76.5
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.5e-204 715.7 504 76.8
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 2.5e-204 715.7 503 76.9
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 5.6e-204 714.5 504 76.4
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.1e-203 712.6 504 76.8
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.1e-202 710.3 491 77.8
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.8e-202 709.5 503 74.8
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.2e-201 706.8 505 76.6
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.6e-201 705.7 491 77.2
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.7e-200 701.8 470 80.6
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 8.3e-200 700.7 503 74.4
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.0e-197 692.2 502 74.3
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 3.9e-197 691.8 491 75.8
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 6.6e-197 691.0 502 75.9
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.6e-197 690.6 523 72.1
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.1e-196 690.3 504 75.4
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 3.3e-196 688.7 500 74.6
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.3e-196 688.7 524 72.9
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 3.3e-196 688.7 476 77.5
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 5.6e-196 688.0 503 75.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-195 686.8 533 70.7
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.8e-195 685.6 504 75.0
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.4e-194 683.3 505 74.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 4.0e-194 681.8 493 75.3
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 6.8e-194 681.0 494 74.5
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 8.9e-194 680.6 494 74.7
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 8.9e-194 680.6 505 74.5
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.5e-193 679.9 502 74.9
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 5.8e-193 677.9 504 72.6
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 9.9e-193 677.2 504 74.6
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 3.8e-192 675.2 492 75.2
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 3.8e-192 675.2 512 71.7
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-191 672.9 512 71.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.4e-191 672.5 494 73.7
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.2e-190 670.2 472 76.1
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.5e-190 668.7 503 72.0
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 6.0e-190 667.9 510 70.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.7e-189 666.4 510 70.6
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.7e-189 666.4 494 72.1
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.0e-189 665.6 504 74.2
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 3.9e-189 665.2 494 72.9
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.1e-188 663.7 510 70.0
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 3.3e-188 662.1 494 71.9
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.2e-187 660.2 503 71.4
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.1e-187 659.4 491 72.9
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.8e-187 659.1 510 69.8
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.8e-187 659.1 503 72.2
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 4.7e-187 658.3 512 71.7
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 6.2e-187 657.9 503 72.2
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.1e-186 657.1 499 71.1
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 3.4e-185 652.1 503 71.8
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.8e-185 651.4 503 71.6
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 8.4e-184 647.5 503 71.2
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-183 647.1 488 71.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.5e-182 642.1 504 70.0
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.0e-181 640.6 492 70.7
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 8.7e-181 637.5 504 72.4
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 4.3e-180 635.2 440 76.8
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 9.6e-180 634.0 504 70.8
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.8e-179 632.5 486 70.4
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 2.8e-179 632.5 487 71.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 4.8e-179 631.7 515 67.4
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.4e-178 629.4 478 72.0
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 3.1e-178 629.0 486 70.0
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 3.1e-178 629.0 497 70.4
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.0e-178 628.6 423 80.6
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 4.0e-178 628.6 488 70.3
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.7e-176 623.2 505 69.5
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.2e-176 622.9 479 69.5
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 3.8e-176 622.1 500 69.6
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.9e-175 619.8 502 68.9
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 7.1e-175 617.8 507 67.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.6e-174 616.7 499 68.7
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 4.6e-174 615.1 504 68.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 6.0e-174 614.8 490 68.4
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.3e-173 612.8 522 64.8
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 4.3e-172 608.6 505 66.3
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.7e-171 605.5 525 65.9
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 4.8e-171 605.1 511 67.1
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.8e-170 603.2 510 67.3
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 4.5e-169 598.6 506 65.6
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.2e-167 592.0 504 65.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.6e-166 590.1 506 62.8
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.1e-166 589.7 488 65.2
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.4e-162 576.2 441 73.7
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.1e-158 563.1 360 83.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.7e-158 562.8 383 80.4
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.5e-151 539.7 533 61.4
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.3e-148 528.9 490 62.4
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 3.4e-145 519.2 482 61.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 7.9e-142 508.1 483 58.6
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 9.7e-140 501.1 498 57.4
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-137 494.2 492 59.3
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.0e-132 476.9 489 59.3
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.0e-129 466.8 454 60.6
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.7e-126 455.7 467 57.4
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.2e-125 452.2 396 68.7
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 2.0e-121 440.3 375 69.1
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.7e-121 439.9 392 61.2
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 6.5e-120 435.3 492 55.9
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.0e-109 401.4 377 62.6
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.0e-109 401.4 377 62.6
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 9.2e-98 361.7 209 87.6
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 6.8e-93 345.5 370 55.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.5e-92 344.4 253 77.9
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 6.0e-89 332.4 324 55.2
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.7e-88 330.9 421 48.9
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.2e-84 318.2 444 45.7
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-82 311.2 222 75.2
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.1e-79 301.6 220 72.3
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.8e-77 294.3 405 43.7
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.4e-61 241.5 274 55.8
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.7e-59 234.6 202 65.8
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.4e-58 231.5 395 40.0
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.4e-58 229.6 441 37.9
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.7e-49 200.7 164 66.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.0e-48 198.7 358 36.3
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 7.4e-47 192.6 289 45.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.7e-39 165.6 99 81.8
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.8e-37 161.4 109 68.8
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.6e-36 157.5 132 64.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 3.4e-36 157.1 94 83.0
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 9.7e-31 139.0 90 78.9
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.5e-26 124.4 144 52.1
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 5.7e-23 113.2 185 42.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.0e-20 104.8 122 50.8
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.4e-15 87.0 91 51.6
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.2e-14 84.7 71 67.6
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.7e-11 75.1 62 58.1
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.7e-11 75.1 62 58.1
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.2e-09 68.9 50 78.0
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.6e-09 68.6 62 53.2
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 2.7e-09 67.8 65 58.5
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 2.6e-07 61.2 93 35.5
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-06 58.5 65 52.3
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.8e-06 57.8 192 31.8
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 6.3e-06 56.6 32 87.5


User provided reference genes

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