Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 3.1e-30 134.4 65 100.0
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.9e-16 88.6 71 60.6
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 4.3e-16 87.4 71 66.2
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 2.8e-15 84.7 72 59.7
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 4.8e-15 84.0 70 64.3
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.0e-13 78.6 71 54.9
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 3.4e-13 77.8 70 64.3
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 5.9e-13 77.0 68 57.4
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 5.9e-13 77.0 68 57.4
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 5.0e-12 73.9 69 56.5
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.4e-11 72.4 69 55.1
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.4e-11 72.4 69 55.1
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.5e-11 71.6 66 56.1
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 4.2e-11 70.9 59 55.9
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 4.2e-11 70.9 67 58.2
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 5.5e-11 70.5 66 56.1
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 9.3e-11 69.7 70 51.4
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 9.3e-11 69.7 67 58.2
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.7e-10 68.2 69 47.8
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 3.5e-10 67.8 63 54.0
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 3.5e-10 67.8 68 55.9
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 4.6e-10 67.4 70 55.7
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 4.6e-10 67.4 70 55.7
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 1.3e-09 65.9 70 52.9
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 1.3e-09 65.9 63 57.1
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 1.8e-09 65.5 67 55.2
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 2.3e-09 65.1 63 55.6
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 3.9e-09 64.3 68 50.0
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 3.9e-09 64.3 51 62.7
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 5.1e-09 63.9 63 54.0
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 5.1e-09 63.9 70 52.9
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 6.7e-09 63.5 66 53.0
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 6.7e-09 63.5 66 53.0
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 6.7e-09 63.5 66 53.0
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 6.7e-09 63.5 66 51.5
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 8.7e-09 63.2 52 59.6
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 8.7e-09 63.2 69 49.3
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.1e-08 62.8 70 52.9
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 1.9e-08 62.0 72 52.8
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 2.5e-08 61.6 37 75.7
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 3.3e-08 61.2 37 75.7
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.3e-08 61.2 70 50.0
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 4.3e-08 60.8 72 51.4
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 4.3e-08 60.8 71 47.9
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 7.4e-08 60.1 67 52.2
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 1.3e-07 59.3 36 72.2
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 1.3e-07 59.3 36 72.2
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.3e-07 59.3 50 58.0
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.3e-07 59.3 71 49.3
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 1.3e-07 59.3 65 46.2
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.6e-07 58.9 71 47.9
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.6e-07 58.9 71 47.9
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 1.6e-07 58.9 65 44.6
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 2.2e-07 58.5 34 76.5
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 2.2e-07 58.5 44 61.4
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.2e-07 58.5 62 46.8
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.2e-07 58.5 68 52.9
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.8e-07 58.2 58 50.0
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 3.7e-07 57.8 44 61.4
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 3.7e-07 57.8 57 50.9
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 3.7e-07 57.8 44 61.4
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 3.7e-07 57.8 35 74.3
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.7e-07 57.8 69 44.9
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 4.8e-07 57.4 35 71.4
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 4.8e-07 57.4 50 54.0
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 4.8e-07 57.4 44 59.1
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 1.1e-06 56.2 69 50.7
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 1.4e-06 55.8 37 62.2
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 1.8e-06 55.5 56 53.6
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.4e-06 55.1 42 59.5
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 2.4e-06 55.1 73 41.1
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 3.1e-06 54.7 34 70.6
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 3.1e-06 54.7 63 41.3
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 3.1e-06 54.7 68 45.6
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 4.1e-06 54.3 60 46.7
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.3e-06 53.9 66 50.0
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 5.3e-06 53.9 42 57.1
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 5.3e-06 53.9 73 41.1
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 6.9e-06 53.5 65 44.6
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 9.0e-06 53.1 64 42.2


User provided reference genes

Program Settings