Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 3.1e-262 907.9 455 100.0
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 1.1e-177 627.1 441 71.4
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 1.1e-177 627.1 435 72.2
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.2e-176 623.6 435 71.7
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 3.8e-175 618.6 435 69.9
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 2.4e-174 615.9 439 69.0
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.2e-174 615.1 450 69.3
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.2e-174 615.1 450 69.3
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.7e-173 612.5 435 69.7
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 7.9e-173 610.9 435 69.7
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.3e-172 610.1 467 67.5
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 1.1e-171 607.1 449 67.5
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 1.1e-171 607.1 449 67.5
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.5e-171 606.7 434 68.0
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 4.3e-171 605.1 444 68.5
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 5.6e-171 604.7 434 68.0
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 9.6e-171 604.0 443 68.4
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 2.1e-170 602.8 444 68.2
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 4.8e-170 601.7 435 67.4
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.4e-169 600.1 434 67.3
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 5.3e-169 598.2 434 67.3
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 5.3e-169 598.2 435 67.4
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 5.3e-169 598.2 435 68.3
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 1.2e-168 597.0 435 66.2
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.5e-168 596.7 440 67.5
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 3.8e-167 592.0 449 66.4
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 1.1e-166 590.5 456 64.3
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 7.1e-166 587.8 440 67.5
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 9.3e-166 587.4 461 65.7
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 6.0e-165 584.7 436 66.5
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 1.0e-164 583.9 435 66.2
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 1.8e-164 583.2 437 67.5
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.8e-164 583.2 435 68.3
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 3.0e-164 582.4 440 65.7
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 5.1e-164 581.6 434 67.5
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 9.7e-163 577.4 440 65.7
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 2.8e-162 575.9 435 65.7
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 2.8e-162 575.9 435 65.7
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 2.4e-161 572.8 439 65.6
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 4.1e-161 572.0 436 66.5
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.2e-160 570.5 486 60.9
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 1.5e-160 570.1 510 59.4
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 7.6e-160 567.8 438 64.6
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 1.7e-159 566.6 442 64.5
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 1.4e-158 563.5 439 64.7
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.9e-158 563.1 434 63.8
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 2.5e-158 562.8 441 64.6
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 3.2e-158 562.4 436 64.0
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 4.2e-158 562.0 434 65.4
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 7.2e-158 561.2 555 54.1
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 2.1e-157 559.7 463 62.2
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 2.1e-157 559.7 434 63.6
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 4.6e-157 558.5 409 67.7
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 1.3e-156 557.0 434 64.5
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 2.5e-155 552.7 433 63.0
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 7.4e-155 551.2 432 66.7
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.7e-154 550.1 435 62.3
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 2.2e-154 549.7 435 63.0
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 2.4e-153 546.2 439 62.0
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 4.1e-153 545.4 384 70.3
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.2e-152 543.9 380 70.3
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 5.9e-152 541.6 443 62.8
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.1e-149 533.1 388 69.8
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 4.7e-149 531.9 464 58.0
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 1.4e-148 530.4 435 63.2
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 8.8e-148 527.7 441 61.7
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 2.0e-147 526.6 359 72.7
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 1.7e-146 523.5 443 58.0
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 1.7e-146 523.5 465 55.9
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 2.8e-146 522.7 385 66.2
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.2e-144 517.3 434 58.5
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 4.5e-144 515.4 428 58.9
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 7.7e-144 514.6 383 65.0
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 2.5e-142 509.6 442 60.4
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.6e-141 505.8 373 69.4
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 1.4e-140 503.8 561 49.6
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 3.9e-140 502.3 412 62.9
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 1.2e-136 490.7 436 57.1
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 3.5e-136 489.2 463 55.9
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.7e-135 486.9 405 61.5
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 1.7e-135 486.9 429 54.5
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 7.7e-128 461.5 318 70.8
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.4e-124 450.7 329 68.4
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 8.8e-124 448.0 344 68.0
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 5.7e-123 445.3 452 56.0
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 2.5e-118 429.9 426 52.3
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.2e-115 421.0 288 70.5
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 2.8e-114 416.4 388 54.6
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 2.8e-114 416.4 427 51.1
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 1.6e-112 410.6 428 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 2.9e-106 389.8 423 48.2
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.1e-105 387.9 286 65.0
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.8e-100 370.5 259 70.7
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 3.1e-100 369.8 315 59.7
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 5.2e-100 369.0 305 63.0
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 2.2e-98 363.6 429 44.3
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 1.5e-86 324.3 361 46.8
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 7.6e-83 312.0 293 57.7
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 2.0e-59 234.2 190 59.5
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.7e-58 231.1 285 46.7
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 9.3e-57 225.3 186 64.0
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 5.8e-51 206.1 152 69.1
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 4.6e-48 196.4 305 39.0
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 3.0e-47 193.7 155 62.6
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 5.7e-46 189.5 130 75.4
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.3e-45 188.3 171 60.2
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 4.1e-44 183.3 350 32.9
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.4e-41 174.9 121 71.1
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 3.9e-39 166.8 200 46.0
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 6.7e-39 166.0 148 56.8
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 6.9e-36 156.0 146 55.5
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 7.2e-33 146.0 94 73.4
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 7.9e-32 142.5 92 71.7
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 5.1e-31 139.8 100 62.0
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 3.7e-29 133.7 97 63.9
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.6e-24 118.2 358 29.3
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 5.2e-15 86.7 59 69.5
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 1.5e-14 85.1 63 61.9
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 4.8e-13 80.1 203 27.1
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 3.1e-12 77.4 70 55.7
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.6e-11 75.1 68 54.4
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 2.9e-10 70.9 49 61.2
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 8.5e-10 69.3 66 56.1
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 8.5e-10 69.3 66 56.1
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 2.7e-08 64.3 59 55.9


User provided reference genes

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