Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 4.9e-73 277.7 140 100.0
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 4.6e-31 138.3 83 78.3
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.8e-30 136.3 85 75.3
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 3.0e-30 135.6 89 74.2
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 3.0e-30 135.6 85 75.3
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 3.9e-30 135.2 86 73.3
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 5.1e-30 134.8 85 71.8
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.7e-30 134.4 86 73.3
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.7e-30 134.4 86 73.3
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.9e-29 132.9 86 74.4
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 2.5e-29 132.5 86 76.7
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 3.3e-29 132.1 86 72.1
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 7.4e-29 131.0 88 69.3
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 7.4e-29 131.0 88 69.3
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 7.4e-29 131.0 84 72.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 7.4e-29 131.0 88 70.5
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 9.6e-29 130.6 102 62.7
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.6e-28 129.8 104 67.3
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.6e-28 129.8 103 65.0
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 2.1e-28 129.4 85 71.8
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 2.1e-28 129.4 85 71.8
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 2.1e-28 129.4 85 71.8
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 2.1e-28 129.4 85 72.9
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.1e-28 129.4 86 72.1
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.1e-28 129.4 85 68.2
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.1e-28 129.4 102 60.8
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 2.1e-28 129.4 85 71.8
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.8e-28 129.0 85 72.9
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 2.8e-28 129.0 85 70.6
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 2.8e-28 129.0 85 70.6
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.8e-28 129.0 89 68.5
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.6e-28 128.6 88 69.3
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 3.6e-28 128.6 86 73.3
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 4.8e-28 128.3 88 68.2
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 4.8e-28 128.3 85 70.6
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 4.8e-28 128.3 85 70.6
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 4.8e-28 128.3 85 70.6
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.8e-28 128.3 85 72.9
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 4.8e-28 128.3 85 69.4
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 4.8e-28 128.3 85 70.6
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 6.2e-28 127.9 85 70.6
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.4e-27 126.7 88 68.2
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 1.8e-27 126.3 86 72.1
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 1.8e-27 126.3 89 66.3
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 2.4e-27 125.9 89 69.7
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 2.4e-27 125.9 85 70.6
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 3.1e-27 125.6 91 64.8
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 4.0e-27 125.2 88 67.0
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 4.0e-27 125.2 85 71.8
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 4.0e-27 125.2 117 56.4
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 9.0e-27 124.0 88 68.2
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 9.0e-27 124.0 84 72.6
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 9.0e-27 124.0 85 69.4
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.2e-26 123.6 86 70.9
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.5e-26 123.2 85 65.9
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.5e-26 123.2 84 70.2
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.0e-26 122.9 84 70.2
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.0e-26 122.9 84 67.9
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 2.0e-26 122.9 85 69.4
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.0e-26 122.9 87 65.5
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 2.6e-26 122.5 88 65.9
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 2.6e-26 122.5 85 68.2
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 2.6e-26 122.5 85 68.2
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 3.4e-26 122.1 123 56.1
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 5.8e-26 121.3 93 65.6
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 5.8e-26 121.3 85 68.2
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 5.8e-26 121.3 86 69.8
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 7.6e-26 120.9 86 70.9
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 9.9e-26 120.6 89 65.2
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 9.9e-26 120.6 85 68.2
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 9.9e-26 120.6 102 60.8
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.3e-25 120.2 84 70.2
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.3e-25 120.2 85 68.2
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.3e-25 120.2 85 67.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.3e-25 120.2 84 69.0
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.3e-25 120.2 85 70.6
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.3e-25 120.2 102 61.8
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.7e-25 119.8 84 72.6
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.9e-25 119.0 84 67.9
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 2.9e-25 119.0 85 65.9
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 2.9e-25 119.0 85 67.1
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.8e-25 118.6 88 62.5
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 4.9e-25 118.2 86 66.3
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 6.4e-25 117.9 89 64.0
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 6.4e-25 117.9 86 68.6
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.4e-25 117.9 86 67.4
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.4e-25 117.9 86 67.4
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 8.4e-25 117.5 84 69.0
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.1e-24 117.1 84 65.5
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.1e-24 117.1 88 59.1
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.1e-24 117.1 84 66.7
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.9e-24 116.3 87 63.2
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.9e-24 116.3 89 65.2
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.9e-24 116.3 86 67.4
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 4.2e-24 115.2 89 64.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 5.5e-24 114.8 84 64.3
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 5.5e-24 114.8 88 63.6
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 7.1e-24 114.4 88 62.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 7.1e-24 114.4 86 64.0
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 9.3e-24 114.0 84 66.7
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.1e-23 112.8 86 64.0
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.7e-23 112.5 86 65.1
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.0e-22 110.5 90 60.0
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.3e-22 110.2 88 61.4
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.3e-22 110.2 85 62.4
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 1.3e-22 110.2 84 64.3
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.3e-22 110.2 84 61.9
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.3e-22 109.4 85 58.8
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 3.0e-22 109.0 86 64.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 3.0e-22 109.0 88 60.2
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 3.9e-22 108.6 85 64.7
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.1e-22 108.2 90 58.9
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 6.7e-22 107.8 88 62.5
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.1e-21 107.1 88 61.4
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.1e-21 107.1 84 59.5
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.5e-21 106.7 84 64.3
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 3.3e-21 105.5 102 55.9
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 7.4e-21 104.4 85 56.5
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 7.4e-21 104.4 83 61.4
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 9.6e-21 104.0 86 61.6
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.6e-20 103.2 85 52.9
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 2.1e-20 102.8 103 54.4
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 2.8e-20 102.4 85 58.8
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 3.7e-20 102.1 85 56.5
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 4.8e-20 101.7 86 60.5
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 4.8e-20 101.7 86 52.3
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 6.2e-20 101.3 103 53.4
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 8.1e-20 100.9 80 58.8
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 8.1e-20 100.9 103 53.4
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.1e-19 100.5 85 57.6
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.4e-19 100.1 101 53.5
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.4e-19 100.1 101 53.5
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 3.1e-19 99.0 103 51.5
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.1e-19 99.0 85 55.3
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 3.1e-19 99.0 85 55.3
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 4.0e-19 98.6 85 54.1
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 4.0e-19 98.6 65 70.8
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 9.0e-19 97.4 102 52.0
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 9.0e-19 97.4 87 57.5
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.2e-18 97.1 86 51.2
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 4.5e-18 95.1 85 49.4
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 5.8e-18 94.7 85 50.6
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.0e-17 94.0 87 56.3
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 1.3e-17 93.6 67 65.7
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.7e-17 93.2 68 66.2
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 3.9e-14 82.0 65 61.5
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.1e-13 80.5 62 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 3.3e-13 79.0 87 42.5
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 3.3e-13 79.0 62 59.7
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 3.3e-13 79.0 84 44.0
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.3e-12 77.0 87 43.7
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 2.1e-12 76.3 88 44.3
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 6.3e-12 74.7 49 67.3
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 3.1e-11 72.4 65 56.9
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 2.9e-09 65.9 68 44.1
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 2.9e-09 65.9 68 44.1
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 2.7e-07 59.3 91 39.6


User provided reference genes

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