Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.2e-132 476.5 234 100.0
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.7e-52 209.5 164 67.1
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.3e-51 206.5 195 59.0
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 3.0e-51 206.1 195 58.5
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.0e-51 206.1 194 60.3
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 5.1e-51 205.3 195 57.4
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 6.7e-51 204.9 194 58.2
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 6.7e-51 204.9 195 59.0
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 8.7e-51 204.5 194 58.8
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 8.7e-51 204.5 193 58.0
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.5e-50 203.8 192 59.9
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.9e-50 203.4 194 58.2
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.3e-50 202.6 195 57.4
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.7e-50 201.8 192 59.4
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 7.4e-50 201.4 194 57.2
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 7.4e-50 201.4 196 58.7
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.3e-49 200.7 194 59.8
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.3e-49 200.7 195 56.9
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.6e-49 200.3 195 57.4
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.6e-49 200.3 162 65.4
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.6e-49 200.3 198 58.1
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.6e-49 200.3 194 57.7
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 2.2e-49 199.9 194 57.7
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 2.8e-49 199.5 194 57.2
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 3.7e-49 199.1 194 57.2
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 3.7e-49 199.1 196 58.7
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 4.8e-49 198.7 194 57.2
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 4.8e-49 198.7 195 58.5
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 6.3e-49 198.4 195 57.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 6.3e-49 198.4 194 57.2
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 6.3e-49 198.4 195 58.5
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 6.3e-49 198.4 194 57.7
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.2e-49 198.0 193 57.5
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.2e-49 198.0 193 57.5
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 8.2e-49 198.0 196 58.2
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 8.2e-49 198.0 195 57.4
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 8.2e-49 198.0 195 56.4
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 1.1e-48 197.6 194 58.8
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.8e-48 196.8 195 55.9
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.8e-48 196.8 195 55.9
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 3.1e-48 196.1 196 55.6
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.1e-48 195.7 196 57.7
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 6.9e-48 194.9 195 57.4
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 6.9e-48 194.9 195 56.4
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 9.1e-48 194.5 182 58.8
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 9.1e-48 194.5 205 56.1
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.2e-47 194.1 196 55.1
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.2e-47 194.1 195 58.5
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.5e-47 193.7 194 54.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 1.5e-47 193.7 195 56.9
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.4e-47 192.6 195 54.4
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 4.5e-47 192.2 194 56.7
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 5.9e-47 191.8 196 54.1
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.3e-46 190.7 194 54.6
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.7e-46 190.3 201 52.7
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.7e-46 190.3 195 55.4
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.2e-46 189.9 193 56.0
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 5.0e-46 188.7 196 54.1
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.9e-45 186.8 231 48.5
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.5e-45 186.4 196 55.6
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 5.5e-45 185.3 197 52.8
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 9.4e-45 184.5 195 56.9
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.2e-44 184.1 195 52.3
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.6e-44 183.7 195 52.3
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 2.7e-44 183.0 246 45.1
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 3.6e-44 182.6 182 57.7
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 4.6e-44 182.2 195 55.9
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 4.6e-44 182.2 195 55.9
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 7.9e-44 181.4 195 52.8
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 7.9e-44 181.4 195 55.4
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.0e-43 181.0 195 51.8
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.3e-43 179.9 195 52.8
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.0e-43 179.5 191 52.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.0e-43 179.5 195 53.3
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 3.9e-43 179.1 193 51.8
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 3.9e-43 179.1 195 52.8
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.5e-42 177.2 195 51.8
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 2.6e-42 176.4 195 52.3
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 2.6e-42 176.4 164 62.8
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.7e-42 174.5 195 51.8
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.3e-41 174.1 197 52.3
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 2.2e-41 173.3 195 51.3
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.7e-41 172.6 195 50.8
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 4.8e-41 172.2 195 50.3
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 8.2e-41 171.4 195 50.8
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.1e-40 171.0 195 50.3
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 2.4e-40 169.9 195 50.3
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 2.4e-40 169.9 195 50.3
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 3.1e-40 169.5 195 50.3
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 3.1e-40 169.5 195 50.3
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 6.9e-40 168.3 195 50.3
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 6.9e-40 168.3 195 50.3
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.1e-40 167.9 195 49.2
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 9.1e-40 167.9 194 51.0
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 9.1e-40 167.9 195 51.3
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.2e-39 167.5 186 52.2
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 1.5e-39 167.2 173 53.2
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.5e-39 165.6 233 44.6
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 7.7e-39 164.9 179 52.5
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.0e-38 164.5 195 49.2
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.0e-38 164.5 210 46.7
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.7e-38 163.7 212 48.1
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 5.0e-38 162.2 197 50.3
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 3.2e-37 159.5 195 46.7
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.2e-37 159.5 197 49.2
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 4.2e-37 159.1 212 47.6
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.2e-37 159.1 195 47.7
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.2e-36 157.5 197 48.7
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.2e-36 157.5 197 48.7
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 2.7e-36 156.4 193 49.2
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.0e-35 154.5 80 87.5
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 2.3e-35 153.3 204 42.6
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 8.8e-35 151.4 161 56.5
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 4.4e-34 149.1 156 51.9
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 9.7e-34 147.9 186 47.3
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 9.7e-34 147.9 187 47.1
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 4.8e-33 145.6 193 44.0
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-32 144.1 78 84.6
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.1e-32 142.9 161 53.4
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.1e-32 142.9 161 53.4
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.1e-32 142.9 161 53.4
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.6e-31 140.6 80 78.8
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.6e-31 139.8 83 77.1
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 7.7e-31 138.3 80 78.8
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.3e-30 137.5 80 80.0
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 1.3e-30 137.5 81 76.5
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.3e-30 137.5 167 49.1
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.7e-30 137.1 161 52.8
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.2e-30 136.7 177 47.5
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.5e-29 134.0 78 79.5
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.5e-29 134.0 80 76.2
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 8.8e-27 124.8 78 74.4
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 1.2e-26 124.4 80 72.5
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.5e-26 124.0 84 65.5
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 2.0e-26 123.6 80 70.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 5.7e-26 122.1 161 46.6
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.0e-23 113.6 194 41.2
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.9e-23 112.1 82 61.0
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 8.5e-22 108.2 148 43.2
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-21 107.8 164 45.1
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.0e-19 101.3 140 45.0
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 3.4e-18 96.3 60 71.7
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 3.7e-17 92.8 165 39.4
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 4.1e-16 89.4 80 58.8
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.4e-16 89.0 50 82.0
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 4.5e-15 85.9 192 33.9
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 7.7e-15 85.1 199 31.2
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 6.5e-14 82.0 43 93.0
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.1e-13 81.3 43 93.0
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.5e-13 79.0 41 95.1
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 5.5e-13 79.0 45 80.0
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 7.2e-13 78.6 43 88.4
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.1e-12 77.0 41 92.7
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 3.6e-12 76.3 45 75.6
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.0e-11 74.7 41 87.8
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 5.2e-11 72.4 43 76.7
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.8e-11 71.6 41 85.4
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.2e-10 71.2 218 26.1
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 2.6e-10 70.1 41 82.9
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 2.6e-10 70.1 42 78.6
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 3.4e-10 69.7 41 82.9
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 5.7e-10 68.9 45 73.3
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 6.3e-09 65.5 34 79.4
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.5e-07 59.3 83 43.4
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.5e-07 59.3 40 75.0


User provided reference genes

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