Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.2e-227 792.0 393 100.0
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 5.4e-162 574.7 451 66.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 7.8e-161 570.9 464 64.9
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.5e-159 566.6 464 63.4
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 5.6e-159 564.7 468 63.9
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.2e-158 563.5 464 62.9
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.8e-157 559.7 467 62.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.8e-157 557.8 464 64.0
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.5e-156 556.6 467 61.7
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.9e-154 549.7 468 62.0
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 5.4e-154 548.1 464 62.1
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 9.2e-154 547.4 464 62.1
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.2e-153 547.0 468 61.1
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.1e-151 540.4 488 60.2
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.5e-151 540.0 466 60.7
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.2e-150 537.0 468 59.6
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.6e-150 536.6 468 59.6
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.1e-150 534.3 468 59.2
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 3.1e-149 532.3 462 60.8
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 6.9e-149 531.2 467 59.7
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.9e-149 530.8 468 58.8
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.8e-148 528.1 464 58.8
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.4e-146 521.5 467 58.0
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.2e-145 520.4 469 58.2
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.7e-144 516.5 463 58.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 3.0e-144 515.8 463 59.6
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.1e-143 513.8 450 59.6
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.9e-143 513.1 438 61.4
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 4.3e-143 511.9 464 56.9
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.6e-142 510.0 468 58.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 4.8e-142 508.4 467 57.4
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.4e-141 506.9 467 56.5
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.8e-141 506.5 466 58.4
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 6.9e-141 504.6 467 56.7
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.3e-139 500.4 467 57.0
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 2.9e-139 499.2 463 57.7
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 3.2e-138 495.7 469 56.3
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 7.1e-138 494.6 464 56.2
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 7.1e-138 494.6 467 57.4
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.7e-137 492.7 463 56.2
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.7e-137 492.7 464 56.7
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 4.6e-137 491.9 464 55.8
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 6.0e-137 491.5 463 57.2
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 3.0e-136 489.2 467 55.9
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 5.1e-136 488.4 470 55.7
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 5.1e-136 488.4 443 59.1
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 5.1e-136 488.4 469 55.0
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 6.7e-136 488.0 468 55.8
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.5e-135 486.9 468 56.2
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.9e-135 486.5 469 54.6
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.5e-135 486.1 468 54.7
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 2.5e-135 486.1 466 54.5
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.3e-135 485.7 464 56.0
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 7.4e-135 484.6 469 54.6
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 9.6e-135 484.2 468 53.8
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-134 483.4 417 61.2
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.1e-134 483.0 463 55.5
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.6e-134 482.3 469 54.2
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 3.6e-134 482.3 466 53.4
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 3.6e-134 482.3 463 55.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 2.4e-133 479.6 475 55.8
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 6.9e-133 478.0 468 54.7
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.5e-132 476.9 467 54.4
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-132 476.9 470 54.0
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.0e-132 476.5 469 53.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-132 476.1 470 54.7
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 4.5e-132 475.3 462 54.1
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 5.8e-132 474.9 469 53.3
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 7.6e-132 474.6 466 53.0
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 9.9e-132 474.2 472 54.7
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-131 473.8 470 54.3
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-131 473.0 470 53.6
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-131 473.0 470 53.6
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 2.9e-131 472.6 469 53.1
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.2e-129 467.2 439 56.3
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.7e-129 466.1 453 54.7
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 7.9e-129 464.5 467 53.5
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.3e-128 463.8 470 53.6
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-128 461.8 466 51.9
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.1e-128 461.8 466 51.5
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-127 459.9 466 51.5
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.3e-127 459.1 474 54.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.6e-127 458.4 467 51.8
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 7.4e-127 458.0 458 53.3
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-126 456.8 459 52.1
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.2e-124 450.7 463 52.7
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.0e-124 449.9 468 51.7
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 7.6e-124 448.0 457 52.7
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 2.5e-122 443.0 452 54.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 7.1e-122 441.4 458 51.7
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.2e-121 440.7 467 50.1
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 6.0e-121 438.3 466 51.1
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-120 436.4 468 51.3
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.3e-120 436.4 417 56.1
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-120 435.6 442 51.4
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-118 430.3 493 48.9
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 6.3e-118 428.3 438 51.1
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 6.3e-118 428.3 462 50.0
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.1e-117 426.0 431 52.9
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 6.9e-117 424.9 409 54.0
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.2e-116 424.1 463 51.2
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 2.9e-115 419.5 437 53.8
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 6.5e-115 418.3 456 49.3
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-114 416.8 469 49.0
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 6.1e-113 411.8 441 50.3
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.0e-112 411.0 437 50.6
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.3e-112 410.6 467 46.3
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 7.4e-111 404.8 439 50.1
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 8.2e-110 401.4 459 48.6
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 6.5e-107 391.7 440 50.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-106 390.6 470 47.9
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 3.9e-104 382.5 469 45.4
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 6.7e-104 381.7 417 52.0
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.1e-103 380.9 500 43.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 7.4e-103 378.3 465 45.2
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.6e-100 369.8 459 43.8
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-99 367.5 389 51.2
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 3.0e-96 356.3 343 56.9
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.9e-96 355.9 434 47.7
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 4.1e-93 345.9 352 52.8
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.8e-88 330.5 364 49.5
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 6.1e-81 305.4 255 62.7
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 5.2e-80 302.4 217 71.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 4.2e-74 282.7 209 69.9
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 9.8e-71 271.6 195 68.7
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 7.0e-69 265.4 462 38.1
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 8.3e-62 241.9 241 53.9
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 4.6e-60 236.1 323 42.7
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 2.1e-57 227.3 438 34.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 1.4e-56 224.6 201 57.7
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 2.6e-55 220.3 424 33.7
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.2e-48 196.1 143 68.5
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-46 191.4 193 53.4
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-43 180.6 190 51.6
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-41 174.1 178 53.4
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 8.7e-35 152.1 181 46.4
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-34 151.8 117 65.8
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 9.0e-32 142.1 115 61.7
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 3.8e-30 136.7 104 71.2
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 4.9e-30 136.3 84 73.8
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 9.3e-29 132.1 208 40.4
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 3.0e-27 127.1 123 49.6
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 8.7e-27 125.6 145 47.6
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 5.6e-26 122.9 145 46.2
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 8.1e-25 119.0 208 38.9
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 2.2e-22 110.9 89 62.9
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-22 110.2 220 36.4
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.1e-21 108.6 102 54.9
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 8.7e-19 99.0 99 53.5
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 9.6e-18 95.5 81 54.3
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-17 95.1 173 36.4
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 8.1e-17 92.4 173 36.4
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 4.5e-15 86.7 116 44.0
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-13 81.6 198 34.3
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 5.5e-13 79.7 126 40.5
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.8e-11 74.7 79 46.8
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.1e-09 67.8 79 44.3
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 6.2e-09 66.2 45 64.4
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 6.2e-09 66.2 45 64.4
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 6.2e-09 66.2 45 64.4
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 1.4e-08 65.1 56 57.1
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.0e-07 61.2 35 77.1
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 2.0e-07 61.2 45 62.2
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 5.8e-07 59.7 51 54.9
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 1.3e-06 58.5 51 56.9
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 8.4e-06 55.8 42 57.1


User provided reference genes

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