Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 9.3e-116 420.2 214 100.0
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 4.1e-15 85.9 160 41.9
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 9.2e-15 84.7 159 42.1
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.6e-14 84.0 159 42.1
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 2.1e-14 83.6 165 43.6
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 2.1e-14 83.6 152 40.1
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.5e-14 82.8 155 44.5
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 6.0e-14 82.0 158 39.9
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 7.8e-14 81.6 76 57.9
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.0e-13 81.3 158 41.1
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.3e-13 80.9 130 40.8
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.3e-13 80.9 112 42.9
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.7e-13 80.5 112 42.0
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 2.3e-13 80.1 151 40.4
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.3e-13 80.1 73 57.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 3.0e-13 79.7 168 39.3
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 3.9e-13 79.3 159 40.3
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 5.1e-13 79.0 71 57.7
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 8.6e-13 78.2 160 38.8
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 8.6e-13 78.2 72 56.9
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.1e-12 77.8 161 36.6
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.1e-12 77.8 160 40.6
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.1e-12 77.8 101 45.5
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.1e-12 77.8 62 58.1
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 1.1e-12 77.8 152 40.1
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.5e-12 77.4 166 39.2
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.5e-12 77.4 112 42.9
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 2.5e-12 76.6 158 41.8
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 2.5e-12 76.6 135 38.5
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 2.5e-12 76.6 160 37.5
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.5e-12 76.6 148 35.8
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 2.5e-12 76.6 154 40.3
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 2.5e-12 76.6 79 50.6
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.3e-12 76.3 156 39.7
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 3.3e-12 76.3 157 40.8
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 3.3e-12 76.3 71 56.3
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.3e-12 76.3 155 41.9
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 4.3e-12 75.9 73 56.2
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 4.3e-12 75.9 156 35.3
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 5.6e-12 75.5 156 40.4
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 5.6e-12 75.5 168 39.3
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 5.6e-12 75.5 63 60.3
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 5.6e-12 75.5 68 55.9
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 5.6e-12 75.5 68 55.9
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 7.3e-12 75.1 151 36.4
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 7.3e-12 75.1 118 41.5
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 7.3e-12 75.1 66 59.1
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 7.3e-12 75.1 55 63.6
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 7.3e-12 75.1 69 58.0
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 9.6e-12 74.7 118 44.1
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 9.6e-12 74.7 118 44.1
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 9.6e-12 74.7 65 63.1
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 9.6e-12 74.7 116 37.9
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 9.6e-12 74.7 148 39.2
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 9.6e-12 74.7 161 39.1
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.2e-11 74.3 49 71.4
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.2e-11 74.3 160 38.8
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 1.2e-11 74.3 112 41.1
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.6e-11 73.9 151 37.1
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.6e-11 73.9 155 40.0
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.1e-11 73.6 160 38.1
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.1e-11 73.6 123 41.5
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.1e-11 73.6 153 39.2
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 2.1e-11 73.6 156 39.1
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.1e-11 73.6 123 39.0
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 2.1e-11 73.6 161 38.5
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 2.8e-11 73.2 165 38.8
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.8e-11 73.2 155 40.0
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.8e-11 73.2 85 48.2
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.8e-11 73.2 153 38.6
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.8e-11 73.2 60 58.3
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.8e-11 73.2 123 39.0
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.8e-11 73.2 71 53.5
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.6e-11 72.8 51 64.7
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 3.6e-11 72.8 160 41.2
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.6e-11 72.8 156 39.7
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 3.6e-11 72.8 165 38.2
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 3.6e-11 72.8 69 55.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 4.7e-11 72.4 153 42.5
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.2e-11 72.0 96 43.8
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.2e-11 72.0 96 43.8
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.2e-11 72.0 96 43.8
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 6.2e-11 72.0 57 63.2
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 6.2e-11 72.0 98 46.9
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 6.2e-11 72.0 129 41.1
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 6.2e-11 72.0 61 63.9
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 8.1e-11 71.6 87 47.1
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.1e-10 71.2 154 37.7
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.1e-10 71.2 149 39.6
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.4e-10 70.9 153 35.3
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.4e-10 70.1 103 43.7
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 3.1e-10 69.7 154 39.6
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 3.1e-10 69.7 154 35.7
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 5.2e-10 68.9 35 82.9
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 5.2e-10 68.9 76 51.3
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 5.2e-10 68.9 54 61.1
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 5.2e-10 68.9 137 38.0
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 5.2e-10 68.9 159 35.8
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 6.9e-10 68.6 165 37.6
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 6.9e-10 68.6 165 37.6
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 8.9e-10 68.2 43 67.4
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.2e-09 67.8 67 55.2
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.2e-09 67.8 73 53.4
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.5e-09 67.4 150 36.0
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.0e-09 67.0 159 33.3
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 2.0e-09 67.0 159 33.3
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 2.0e-09 67.0 37 81.1
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 2.6e-09 66.6 154 35.7
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 2.6e-09 66.6 159 37.7
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 3.4e-09 66.2 69 53.6
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 3.4e-09 66.2 147 37.4
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.4e-09 65.9 165 35.8
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 4.4e-09 65.9 53 64.2
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 5.8e-09 65.5 84 48.8
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.3e-08 64.3 64 56.2
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.3e-08 64.3 89 41.6
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.3e-08 64.3 61 52.5
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.7e-08 63.9 152 36.2
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.7e-08 63.9 152 36.2
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.7e-08 63.9 152 36.2
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 1.7e-08 63.9 140 37.1
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-08 63.9 89 41.6
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.2e-08 63.5 159 35.8
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.9e-08 63.2 89 41.6
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.9e-08 63.2 89 41.6
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 3.8e-08 62.8 156 34.6
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.9e-08 62.4 87 39.1
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 8.4e-08 61.6 89 39.3
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 8.4e-08 61.6 66 45.5
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 8.4e-08 61.6 34 73.5
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.4e-08 61.6 156 36.5
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.1e-07 61.2 161 36.0
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.4e-07 60.1 59 50.8
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 5.4e-07 58.9 67 49.3
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 5.4e-07 58.9 96 40.6
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 5.4e-07 58.9 35 68.6
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 7.1e-07 58.5 65 46.2
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 3.5e-06 56.2 93 37.6


User provided reference genes

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