Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 2.5e-245 851.7 430 100.0
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 2.9e-100 369.8 315 62.2
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 4.9e-100 369.0 314 64.3
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.4e-99 365.5 315 62.5
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.6e-98 364.0 315 61.6
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 3.9e-97 359.4 314 62.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.5e-96 357.5 315 61.6
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.4e-94 350.9 315 62.2
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.0e-93 347.1 312 59.0
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.6e-93 346.7 315 60.3
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.7e-92 344.0 318 60.4
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 2.9e-92 343.2 314 59.6
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 7.1e-91 338.6 318 60.4
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 3.9e-89 332.8 316 58.2
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 8.7e-89 331.6 316 57.6
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.9e-88 330.5 316 57.0
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 2.5e-88 330.1 316 57.3
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 5.7e-88 328.9 343 53.9
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 5.7e-88 328.9 321 56.4
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 1.6e-87 327.4 312 57.1
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.7e-87 326.2 314 58.0
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.7e-87 326.2 315 58.1
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.1e-86 324.7 316 56.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.4e-86 324.3 321 55.5
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 4.0e-86 322.8 313 56.2
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 6.9e-86 322.0 318 56.3
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 9.0e-86 321.6 307 57.0
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.8e-84 316.2 291 59.1
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.8e-84 316.2 312 57.1
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 4.2e-83 312.8 311 57.6
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 2.1e-82 310.5 317 56.8
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 7.9e-82 308.5 316 54.4
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 7.9e-82 308.5 322 52.5
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 5.1e-81 305.8 314 55.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 2.5e-80 303.5 313 53.7
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 9.7e-80 301.6 316 55.1
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 3.7e-79 299.7 322 54.0
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.7e-79 299.7 311 53.7
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 2.0e-77 293.9 317 52.7
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 2.0e-77 293.9 317 54.3
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.6e-77 293.5 323 53.9
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 3.4e-77 293.1 323 52.9
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 3.4e-77 293.1 367 48.8
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.3e-76 291.2 317 53.0
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.3e-76 291.2 327 50.2
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.3e-76 291.2 358 48.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.2e-76 290.4 318 52.2
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 2.2e-76 290.4 313 53.0
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 2.9e-76 290.0 316 53.2
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 5.0e-76 289.3 317 53.9
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.0e-76 289.3 323 49.8
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 1.4e-75 287.7 318 52.2
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.4e-75 287.7 315 52.7
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.9e-75 287.3 313 52.7
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.5e-75 285.8 323 49.2
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 9.4e-75 285.0 318 51.3
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.2e-74 284.6 313 54.3
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 6.1e-74 282.3 312 51.6
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 7.9e-74 282.0 314 53.2
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 3.9e-73 279.6 318 54.1
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.1e-72 278.1 320 50.6
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.0e-72 277.3 316 51.6
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 2.0e-72 277.3 326 51.5
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 4.3e-72 276.2 318 52.2
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 4.3e-72 276.2 320 51.6
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 5.7e-72 275.8 328 51.2
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.7e-71 274.2 318 51.3
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.8e-71 273.5 313 50.8
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 6.3e-71 272.3 322 50.6
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.0e-68 265.0 317 49.5
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 3.8e-68 263.1 315 50.5
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 6.5e-68 262.3 218 61.9
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.4e-67 261.2 313 50.2
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.5e-67 260.4 325 47.4
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.7e-66 256.9 316 48.4
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 4.7e-66 256.1 318 49.4
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.4e-65 254.6 323 47.1
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 8.8e-65 251.9 311 48.6
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.5e-64 251.1 247 56.7
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 3.3e-64 250.0 315 46.7
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 5.7e-64 249.2 332 48.8
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 7.4e-64 248.8 314 48.7
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 4.8e-63 246.1 315 48.3
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 2.4e-62 243.8 319 47.6
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 7.0e-62 242.3 312 46.8
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 7.7e-61 238.8 194 65.5
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.0e-60 238.4 321 47.7
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 2.2e-60 237.3 311 48.2
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.2e-60 237.3 317 46.1
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.8e-60 236.5 321 47.4
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 5.0e-60 236.1 312 47.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 8.5e-60 235.3 319 44.8
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-59 235.0 311 45.0
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 4.2e-59 233.0 312 47.1
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 5.5e-59 232.6 312 45.5
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 5.5e-59 232.6 310 45.8
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.2e-58 231.5 310 47.1
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 8.0e-58 228.8 314 43.6
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 2.3e-57 227.3 302 48.7
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.3e-57 227.3 312 45.8
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.0e-57 226.9 316 44.6
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 6.7e-57 225.7 237 51.5
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 8.8e-57 225.3 319 45.1
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.0e-56 224.2 319 44.2
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.7e-55 221.1 346 42.5
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.7e-55 221.1 396 38.6
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 3.7e-55 219.9 327 43.7
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.4e-54 218.0 335 43.9
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 3.1e-54 216.9 328 42.7
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 2.6e-53 213.8 315 43.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.0e-52 211.8 310 42.3
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 2.5e-51 207.2 200 58.5
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 3.0e-49 200.3 310 42.6
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.2e-48 198.4 310 41.3
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 2.6e-48 197.2 310 42.9
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 7.5e-48 195.7 235 51.5
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.3e-47 194.9 246 47.2
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.1e-46 191.8 328 40.2
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 3.1e-46 190.3 318 39.6
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 9.1e-46 188.7 326 42.3
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 5.0e-44 183.0 316 41.8
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 1.5e-40 171.4 167 55.7
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.9e-35 154.5 240 40.0
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 9.5e-35 152.1 191 49.7
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 4.7e-34 149.8 363 35.5
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.9e-31 140.6 170 48.2
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 2.5e-27 127.5 259 34.7
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 2.1e-26 124.4 281 35.9
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 4.4e-24 116.7 332 32.5
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.7e-23 114.8 318 32.4
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.9e-22 111.3 287 31.4
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-19 102.1 132 43.2
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 4.3e-19 100.1 112 49.1
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.2e-18 98.6 220 30.9
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.4e-17 95.1 175 39.4
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 5.2e-17 93.2 161 36.0
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 2.3e-12 77.8 95 43.2
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 3.3e-11 73.9 78 52.6
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.2e-10 72.0 238 28.2
Rhsim03G0069200 Rhododendron simsii HOM05D000046 ORTHO05D001818 1.2e-08 65.5 74 48.6
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 1.7e-07 61.6 59 55.9
Cpa.g.sc111.42 Carica papaya HOM05D000003 ORTHO05D000004 2.2e-07 61.2 64 45.3
Cpa.g.sc2.86 Carica papaya HOM05D000003 ORTHO05D000004 6.4e-07 59.7 51 54.9
Cpa.g.sc272.4 Carica papaya HOM05D000003 ORTHO05D000004 6.4e-07 59.7 59 45.8
Cpa.g.sc47.54 Carica papaya HOM05D000003 ORTHO05D000004 2.4e-06 57.8 59 45.8
Cpa.g.sc35.64 Carica papaya HOM05D000003 ORTHO05D000004 5.4e-06 56.6 51 49.0
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 9.2e-06 55.8 50 54.0


User provided reference genes

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