Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.4e-301 1038.1 550 100.0
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.4e-229 799.7 549 77.8
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 3.2e-229 798.5 558 76.9
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 6.9e-224 780.8 550 75.8
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.5e-223 779.6 558 74.0
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 7.7e-223 777.3 552 75.4
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 3.8e-222 775.0 551 74.4
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 3.0e-219 765.4 559 72.5
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 7.0e-216 754.2 549 74.5
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 9.1e-216 753.8 549 72.9
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 2.0e-215 752.7 556 71.0
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 5.0e-214 748.0 551 73.5
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.5e-213 746.5 661 64.4
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 3.2e-213 745.3 558 71.9
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.2e-213 745.3 548 71.5
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 7.2e-213 744.2 549 72.1
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.6e-212 743.0 549 71.8
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.6e-212 743.0 556 70.9
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 5.2e-211 738.0 557 71.6
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.2e-210 736.9 549 71.6
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 3.3e-210 735.3 557 72.0
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.2e-209 732.6 551 69.9
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 8.2e-209 730.7 557 72.9
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 1.4e-208 729.9 558 73.5
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 2.4e-208 729.2 557 72.2
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 3.1e-208 728.8 558 73.1
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 6.5e-206 721.1 556 69.6
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.5e-205 719.2 557 67.9
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.2e-204 716.8 557 72.0
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.6e-204 716.5 557 71.6
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.0e-203 713.8 550 69.1
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.0e-203 713.8 550 71.1
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.0e-203 711.8 566 70.8
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 8.8e-203 710.7 557 70.7
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.2e-202 710.3 548 70.4
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 2.6e-202 709.1 549 68.7
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 2.6e-202 709.1 557 70.4
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.6e-202 709.1 548 70.8
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 7.5e-202 707.6 557 71.3
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.7e-201 706.4 569 70.3
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.7e-201 706.4 550 69.6
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 3.7e-201 705.3 589 65.9
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 8.3e-201 704.1 551 68.2
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-200 703.7 549 69.6
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.1e-200 703.7 549 69.8
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.4e-200 701.4 551 69.7
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.2e-199 700.3 557 69.3
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.6e-199 699.9 559 67.4
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.5e-199 698.4 561 65.6
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 6.5e-198 694.5 549 67.2
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.5e-197 693.3 535 68.2
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 9.5e-197 690.6 555 68.3
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.2e-196 690.3 552 69.0
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.2e-195 684.9 550 66.9
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 8.9e-195 684.1 549 65.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 8.9e-195 684.1 558 66.5
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.0e-194 682.9 550 66.0
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 4.4e-194 681.8 561 65.6
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.3e-193 680.2 551 66.8
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.1e-192 677.2 557 65.7
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 2.4e-192 676.0 556 64.2
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.4e-192 676.0 557 65.0
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 9.2e-192 674.1 551 67.9
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 2.7e-191 672.5 555 67.2
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-190 670.6 555 65.9
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.7e-190 669.8 559 65.5
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 3.8e-190 668.7 551 66.1
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 5.0e-190 668.3 557 67.3
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 6.6e-190 667.9 555 66.8
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 8.6e-190 667.5 557 64.6
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 4.3e-189 665.2 560 65.5
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 5.6e-189 664.8 584 62.3
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 9.5e-189 664.1 555 66.5
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.8e-188 662.5 559 64.6
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 3.6e-188 662.1 556 66.0
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.8e-187 659.8 526 67.1
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 3.0e-187 659.1 562 66.0
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 2.0e-186 656.4 553 66.7
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 3.4e-186 655.6 529 64.8
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 7.5e-186 654.4 553 66.5
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 7.5e-186 654.4 556 63.1
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-185 653.7 553 67.1
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-185 653.7 553 67.1
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 2.2e-185 652.9 557 64.6
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 3.7e-185 652.1 551 65.2
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 7.0e-184 647.9 553 66.7
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 2.3e-182 642.9 556 62.8
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 3.9e-182 642.1 557 64.5
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 8.6e-182 641.0 601 60.1
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 2.5e-181 639.4 552 63.9
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.2e-180 637.1 546 63.6
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.8e-180 636.0 532 63.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 6.2e-180 634.8 562 64.1
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 4.0e-179 632.1 556 61.3
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.2e-177 626.3 567 60.7
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.7e-177 625.5 567 60.7
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.4e-176 623.6 550 63.8
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.4e-176 622.9 556 63.1
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 9.2e-176 620.9 549 62.7
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 7.8e-175 617.8 452 73.2
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 5.0e-174 615.1 549 62.7
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 4.7e-172 608.6 551 61.0
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.8e-171 606.7 533 61.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.3e-171 606.3 553 59.0
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 2.3e-171 606.3 554 60.1
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.5e-170 603.6 558 59.9
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.3e-169 600.5 527 63.4
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.4e-168 597.0 556 59.5
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 4.1e-168 595.5 557 58.5
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.1e-165 587.4 559 57.2
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.2e-164 583.9 540 61.7
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.2e-162 577.4 558 57.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.0e-158 562.8 556 58.3
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 4.7e-156 555.4 491 63.5
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.8e-155 553.5 547 58.9
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.1e-147 527.7 548 54.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 4.0e-147 525.8 495 60.0
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 9.3e-136 488.0 504 56.9
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.0e-134 484.6 755 43.0
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.1e-133 481.1 557 52.2
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 2.5e-133 479.9 556 51.1
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 7.4e-133 478.4 549 51.9
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 3.7e-132 476.1 537 53.1
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.4e-131 473.4 582 50.5
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.2e-129 466.8 513 54.4
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.0e-126 458.0 556 50.5
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.8e-126 457.2 347 69.7
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 3.4e-122 443.0 539 50.5
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 6.9e-115 418.7 555 47.0
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 3.9e-110 402.9 492 47.8
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 9.4e-104 381.7 450 50.2
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.3e-97 361.3 575 39.0
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 5.5e-96 355.9 428 51.9
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 6.5e-89 332.4 264 64.4
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.7e-87 327.0 564 39.2
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.4e-86 324.7 538 38.3
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.8e-84 317.0 268 63.1
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 9.2e-67 258.8 283 55.8
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.5e-64 250.8 212 65.6
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 9.5e-64 248.8 195 71.3
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 3.4e-61 240.4 395 37.5
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 7.3e-48 196.1 173 63.0
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 6.6e-41 172.9 183 53.0
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.4e-38 165.2 139 66.9
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.9e-35 154.8 205 48.3
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.9e-35 154.8 205 48.3
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-30 138.7 184 46.2
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-30 138.7 184 46.2
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-22 111.7 178 42.1
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 6.5e-20 103.2 102 55.9
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.2e-19 100.9 203 35.5
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-18 99.0 195 39.0
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.8e-17 95.1 60 81.7
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 2.5e-16 91.3 104 50.0
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 4.0e-14 84.0 173 35.3
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.3e-12 79.0 78 59.0
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.6e-10 72.0 63 54.0
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 6.1e-10 70.1 51 68.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 6.1e-10 70.1 63 55.6
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 3.9e-09 67.4 37 91.9
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-08 63.2 47 61.7
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-06 57.0 79 38.0


User provided reference genes

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