Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.259 Carica papaya HOM05D001005 ORTHO05D000836 1.0e-69 266.5 126 100.0
Thecc.05G063800 Theobroma cacao HOM05D001005 ORTHO05D000836 3.2e-23 112.1 120 50.0
COL.COLO4_26984 Corchorus olitorius HOM05D001005 ORTHO05D000836 1.5e-20 103.2 111 46.8
RcHm_v2.0_Chr3g0470011 Rosa chinensis HOM05D001005 ORTHO05D000836 3.3e-20 102.1 115 48.7
Duzib093G1215 Durio zibethinus HOM05D001005 ORTHO05D000836 1.6e-19 99.8 127 45.7
Prupe.6G234300 Prunus persica HOM05D001005 ORTHO05D000836 3.6e-19 98.6 114 48.2
Ciclev10012127m.g Citrus clementina HOM05D001005 ORTHO05D000836 6.2e-19 97.8 130 46.9
MD12G1115200 Malus domestica HOM05D001005 ORTHO05D000836 1.2e-17 93.6 114 47.4
Gohir.A09G148300 Gossypium hirsutum HOM05D001005 ORTHO05D000836 2.0e-17 92.8 113 47.8
Gohir.D09G144100 Gossypium hirsutum HOM05D001005 ORTHO05D000836 9.9e-17 90.5 113 46.9
Gorai.006G165400 Gossypium raimondii HOM05D001005 ORTHO05D000836 1.3e-16 90.1 113 48.7
Potri.016G094700 Populus trichocarpa HOM05D001005 ORTHO05D000836 4.9e-16 88.2 130 46.9
Phvul.001G178500 Phaseolus vulgaris HOM05D001005 ORTHO05D000836 8.4e-16 87.4 116 46.6
VMungo1383G2446 Vigna mungo HOM05D001005 ORTHO05D000836 1.1e-15 87.0 131 44.3
TPR.G9365 Trifolium pratense HOM05D001005 ORTHO05D000836 1.4e-15 86.7 115 45.2
Sabra16G0097000 Salix brachista HOM05D001005 ORTHO05D000836 1.9e-15 86.3 124 42.7
MD04G1095000 Malus domestica HOM05D001005 ORTHO05D000836 2.4e-15 85.9 115 43.5
Medtr1g063900 Medicago truncatula HOM05D001005 ORTHO05D000836 5.4e-15 84.7 106 45.3
Psat6g072720 Pisum sativum HOM05D001005 ORTHO05D000836 5.4e-15 84.7 110 45.5
Psat3g043160 Pisum sativum HOM05D001005 ORTHO05D000836 7.1e-15 84.3 115 46.1
TWI74G0773 Tripterygium wilfordii HOM05D001005 ORTHO05D000836 1.2e-14 83.6 112 48.2
Glyma.10G057500 Glycine max HOM05D001005 ORTHO05D000836 1.6e-14 83.2 113 42.5
Glyma.13G144300 Glycine max HOM05D001005 ORTHO05D000836 2.7e-14 82.4 114 42.1
Potri.006G125900 Populus trichocarpa HOM05D001005 ORTHO05D000836 2.7e-14 82.4 145 43.4
Lalb_Chr25g0289031 Lupinus albus HOM05D001005 ORTHO05D000836 3.5e-14 82.0 117 46.2
Gorai.009G415500 Gossypium raimondii HOM05D001005 ORTHO05D000836 4.6e-14 81.6 114 43.9
Lalb_Chr02g0156041 Lupinus albus HOM05D001005 ORTHO05D000836 4.6e-14 81.6 113 43.4
Gohir.A04G072700 Gossypium hirsutum HOM05D001005 ORTHO05D000836 6.0e-14 81.3 114 43.0
Lj5g0026670 Lotus japonicus HOM05D001005 ORTHO05D000836 7.9e-14 80.9 113 40.7
CiPaw.09G173700 Carya illinoinensis HOM05D001005 ORTHO05D000836 1.0e-13 80.5 120 44.2
Ca_08856_v3 Cicer arietinum L. HOM05D001005 ORTHO05D000836 1.0e-13 80.5 122 44.3
Ca_11490_v3 Cicer arietinum L. HOM05D001005 ORTHO05D000836 1.0e-13 80.5 107 44.9
Gohir.D04G111400 Gossypium hirsutum HOM05D001005 ORTHO05D000836 1.3e-13 80.1 106 43.4
Atru.chr8.1835 Acer truncatum HOM05D001005 ORTHO05D000836 1.7e-13 79.7 104 46.2
CiPaw.10G132200 Carya illinoinensis HOM05D001005 ORTHO05D000836 1.3e-11 73.6 101 45.5
QL07p043934 Quercus lobata HOM05D001005 ORTHO05D000836 2.8e-11 72.4 106 41.5
PGSC0003DMG400021552 Solanum tuberosum HOM05D001005 ORTHO05D000836 2.8e-11 72.4 110 41.8
GSVIVG01025715001 Vitis vinifera HOM05D001005 ORTHO05D000836 3.6e-11 72.0 111 45.9
FvH4_6g16161 Fragaria vesca HOM05D001005 ORTHO05D000836 4.8e-11 71.6 136 36.0
Solyc09g008020.4 Solanum lycopersicum HOM05D001005 ORTHO05D000836 4.8e-11 71.6 110 41.8
Haze_20568 Corylus avellana HOM05D001005 ORTHO05D000836 2.4e-10 69.3 114 42.1
Sopen09g002820 Solanum pennellii HOM05D001005 ORTHO05D000836 3.1e-10 68.9 110 40.9
Lalb_Chr20g0112651 Lupinus albus HOM05D001005 ORTHO05D000836 5.3e-10 68.2 115 40.9
VMungo0720G1990 Vigna mungo HOM05D001005 ORTHO05D000836 5.3e-10 68.2 118 36.4
Phvul.007G149800 Phaseolus vulgaris HOM05D001005 ORTHO05D000836 9.0e-10 67.4 115 37.4
TAR369G0291 Trochodendron aralioides HOM05D001005 ORTHO05D000836 9.0e-10 67.4 89 48.3
Cfa017583 Carpinus fangiana HOM05D001005 ORTHO05D000836 1.2e-09 67.0 112 41.1
CAN.G900.52 Capsicum annuum HOM05D001005 ORTHO05D000836 2.0e-09 66.2 110 40.0
Dinv35772 Davidia involucrata HOM05D001005 ORTHO05D000836 2.6e-09 65.9 105 44.8
TAR633G2577 Trochodendron aralioides HOM05D001005 ORTHO05D000836 2.6e-09 65.9 104 46.2
Nitab4.5_0000101g0360 Nicotiana tabacum HOM05D001005 ORTHO05D000836 3.4e-09 65.5 110 39.1
TAR623G0632 Trochodendron aralioides HOM05D001005 ORTHO05D000836 4.5e-09 65.1 73 56.2
AL6G12660 Arabidopsis lyrata HOM05D001005 ORTHO05D000836 5.8e-09 64.7 121 33.9
arahy.Tifrunner.gnm1.ann1.LZX2G7 Arachis hypogaea HOM05D001005 ORTHO05D000836 7.6e-09 64.3 142 38.7
Dinv29342 Davidia involucrata HOM05D001005 ORTHO05D000836 7.6e-09 64.3 110 41.8
Manes.09G067600 Manihot esculenta HOM05D001005 ORTHO05D000836 7.6e-09 64.3 118 40.7
arahy.Tifrunner.gnm1.ann1.6XU9KP Arachis hypogaea HOM05D001005 ORTHO05D000836 1.3e-08 63.5 123 39.0
arahy.Tifrunner.gnm1.ann1.SUG60F Arachis hypogaea HOM05D001005 ORTHO05D000836 1.3e-08 63.5 123 39.0
Sp6g39410 Schrenkiella parvula HOM05D001005 ORTHO05D000836 1.3e-08 63.5 117 36.8
Sc02g0001820 Simmondsia chinensis HOM05D001005 ORTHO05D000836 1.3e-08 63.5 102 37.3
TAR636G1977 Trochodendron aralioides HOM05D001005 ORTHO05D000836 2.2e-08 62.8 113 42.5
Nitab4.5_0002963g0050 Nicotiana tabacum HOM05D001005 ORTHO05D000836 2.9e-08 62.4 110 38.2
Nn2g11547 Nelumbo nucifera HOM05D001005 ORTHO05D000836 3.8e-08 62.0 112 38.4
EL10Ac6g15629 Beta vulgaris HOM05D001005 ORTHO05D000836 4.9e-08 61.6 112 34.8
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 4.9e-08 61.6 133 33.1
Sed0017880 Sechium edule HOM05D001005 ORTHO05D000836 4.9e-08 61.6 105 47.6
MSTRG.5753 Avicennia marina HOM05D001005 ORTHO05D000836 6.4e-08 61.2 94 43.6
CARHR210010 Cardamine hirsuta HOM05D001005 ORTHO05D000836 6.4e-08 61.2 125 32.8
Lj2A116G67 Lonicera japonica HOM05D001005 ORTHO05D000836 6.4e-08 61.2 129 38.8
ClCG04G009220 Citrullus lanatus HOM05D001005 ORTHO05D000836 1.9e-07 59.7 114 39.5
AT5G03330 Arabidopsis thaliana HOM05D001005 ORTHO05D000836 2.4e-07 59.3 126 33.3
Thhalv10013954m.g Eutrema salsugineum HOM05D001005 ORTHO05D000836 2.4e-07 59.3 125 35.2
THA.LOC104816344 Tarenaya hassleriana HOM05D001005 ORTHO05D000836 3.2e-07 58.9 112 39.3
Atru.chr3.3584 Acer truncatum HOM05D001005 ORTHO05D000836 4.2e-07 58.5 115 38.3
ClCG10G020220 Citrullus lanatus HOM05D001005 ORTHO05D000836 4.2e-07 58.5 103 42.7
CSS0016688 Camellia sinensis var. sinensis HOM05D001005 ORTHO05D000836 5.5e-07 58.2 112 41.1
Peaxi162Scf00123g01731 Petunia axillaris HOM05D001005 ORTHO05D000836 5.5e-07 58.2 110 36.4
Rhsim03G0117600 Rhododendron simsii HOM05D001005 ORTHO05D000836 5.5e-07 58.2 112 39.3
GSVIVG01025232001 Vitis vinifera HOM05D001005 ORTHO05D000836 5.5e-07 58.2 110 40.0
Carub.0006s0214 Capsella rubella HOM05D001005 ORTHO05D000836 7.1e-07 57.8 120 33.3
MELO3C009347.2 Cucumis melo HOM05D001005 ORTHO05D000836 7.1e-07 57.8 104 42.3
Eucgr.J00903 Eucalyptus grandis HOM05D001005 ORTHO05D000836 7.1e-07 57.8 109 35.8
Manes.08G009100 Manihot esculenta HOM05D001005 ORTHO05D000836 7.1e-07 57.8 102 45.1
vmacro07285 Vaccinium macrocarpon HOM05D001005 ORTHO05D000836 7.1e-07 57.8 106 42.5
Sed0004978 Sechium edule HOM05D001005 ORTHO05D000836 9.3e-07 57.4 106 41.5
CiPaw.13G117400 Carya illinoinensis HOM05D001005 ORTHO05D000836 1.2e-06 57.0 109 40.4
CsaV3_3G035880 Cucumis sativus L. HOM05D001005 ORTHO05D000836 1.2e-06 57.0 104 42.3
Manes.04G016900 Manihot esculenta HOM05D001005 ORTHO05D000836 1.2e-06 57.0 126 34.9
CSS0039664 Camellia sinensis var. sinensis HOM05D001005 ORTHO05D000836 1.6e-06 56.6 107 36.4
Lsat_1_v5_gn_1_51980 Lactuca sativa HOM05D001005 ORTHO05D000836 2.7e-06 55.8 105 36.2
Ah.02g125460 Amaranthus hybridus HOM05D001005 ORTHO05D000836 3.5e-06 55.5 134 32.8
Ciclev10028790m.g Citrus clementina HOM05D001005 ORTHO05D000836 4.6e-06 55.1 112 35.7
Rhsim13G0098000 Rhododendron simsii HOM05D001005 ORTHO05D000836 4.6e-06 55.1 113 35.4
Ah.03g140450 Amaranthus hybridus HOM05D001005 ORTHO05D000836 6.0e-06 54.7 117 31.6
BcaC03g13016 Brassica carinata HOM05D001005 ORTHO05D000836 6.0e-06 54.7 90 42.2
PGR004G2066 Punica granatum HOM05D001005 ORTHO05D000836 6.0e-06 54.7 113 37.2
Haze_23768 Corylus avellana HOM05D001005 ORTHO05D000836 7.9e-06 54.3 113 41.6


User provided reference genes

Program Settings