Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.195 Carica papaya HOM05D005522 ORTHO05D007414 0.0e+00 1182.2 598 100.0
COL.COLO4_33937 Corchorus olitorius HOM05D005522 ORTHO05D007414 1.3e-287 992.6 606 81.7
Thecc.05G141500 Theobroma cacao HOM05D005522 ORTHO05D007414 1.7e-287 992.3 604 80.6
Duzib093G0281 Durio zibethinus HOM05D005522 ORTHO05D007414 1.8e-286 988.8 598 82.4
THA.LOC104816408 Tarenaya hassleriana HOM05D005522 ORTHO05D007414 2.0e-285 985.3 600 81.3
Atru.chr1.1278 Acer truncatum HOM05D005522 ORTHO05D007414 8.5e-284 979.9 602 80.9
Gohir.A11G308400 Gossypium hirsutum HOM05D005522 ORTHO05D007414 3.6e-282 974.5 551 84.2
Gorai.007G353900 Gossypium raimondii HOM05D005522 ORTHO05D007414 4.7e-282 974.2 551 84.2
Manes.08G056700 Manihot esculenta HOM05D005522 ORTHO05D007414 5.7e-280 967.2 611 77.7
Sp5g14030 Schrenkiella parvula HOM05D005522 ORTHO05D007414 9.7e-280 966.5 611 79.7
Dinv18487 Davidia involucrata HOM05D005522 ORTHO05D007414 1.3e-279 966.1 611 80.4
Thhalv10010214m.g Eutrema salsugineum HOM05D005522 ORTHO05D007414 4.8e-279 964.1 611 79.1
Dinv04140 Davidia involucrata HOM05D005522 ORTHO05D007414 6.3e-279 963.8 621 77.6
Haze_19737 Corylus avellana HOM05D005522 ORTHO05D007414 1.1e-278 963.0 605 79.5
CANSAT80G2685 Cannabis sativa HOM05D005522 ORTHO05D007414 1.4e-278 962.6 598 79.8
Actinidia39175 Actinidia chinensis HOM05D005522 ORTHO05D007414 4.1e-278 961.1 624 78.4
BcaB01g00861 Brassica carinata HOM05D005522 ORTHO05D007414 5.3e-278 960.7 607 79.1
CANSAT80G0471 Cannabis sativa HOM05D005522 ORTHO05D007414 1.2e-277 959.5 598 78.6
BcaC01g01764 Brassica carinata HOM05D005522 ORTHO05D007414 2.6e-277 958.4 602 77.7
BolC3t19512H Brassica oleracea HOM05D005522 ORTHO05D007414 2.6e-277 958.4 602 77.7
ClCG04G004060 Citrullus lanatus HOM05D005522 ORTHO05D007414 2.6e-277 958.4 604 78.5
CiPaw.10G038000 Carya illinoinensis HOM05D005522 ORTHO05D007414 3.5e-277 958.0 608 78.0
BraA06t25053Z Brassica rapa HOM05D005522 ORTHO05D007414 4.5e-277 957.6 604 79.3
Cfa016729 Carpinus fangiana HOM05D005522 ORTHO05D007414 7.7e-277 956.8 606 78.7
A06p19740 Brassica napus HOM05D005522 ORTHO05D007414 1.3e-276 956.1 605 79.2
TWI77G0538 Tripterygium wilfordii HOM05D005522 ORTHO05D007414 2.9e-276 954.9 607 78.6
CsaV3_UNG143090 Cucumis sativus L. HOM05D005522 ORTHO05D007414 3.8e-276 954.5 597 79.1
Rhsim03G0034500 Rhododendron simsii HOM05D005522 ORTHO05D007414 3.8e-276 954.5 617 78.0
TAR171G0004 Trochodendron aralioides HOM05D005522 ORTHO05D007414 5.0e-276 954.1 615 76.3
Eucgr.A02267 Eucalyptus grandis HOM05D005522 ORTHO05D007414 6.5e-276 953.7 598 81.1
MELO3C020736.2 Cucumis melo HOM05D005522 ORTHO05D007414 1.1e-275 953.0 601 78.4
Aa31LG4G16570 Aethionema arabicum HOM05D005522 ORTHO05D007414 1.9e-275 952.2 611 77.7
Hma1.2p1_0056F.1_g031850 Hydrangea macrophylla HOM05D005522 ORTHO05D007414 1.9e-275 952.2 552 83.3
C03p72160 Brassica napus HOM05D005522 ORTHO05D007414 2.5e-275 951.8 608 78.1
CSS0038435 Camellia sinensis var. sinensis HOM05D005522 ORTHO05D007414 4.2e-275 951.0 611 77.1
Carub.0005s1405 Capsella rubella HOM05D005522 ORTHO05D007414 1.0e-273 946.4 603 77.8
SGA_v2.0_scaffold69G23141 Striga asiatica HOM05D005522 ORTHO05D007414 1.0e-273 946.4 603 78.4
RhsimUnG0217500 Rhododendron simsii HOM05D005522 ORTHO05D007414 1.8e-273 945.7 640 75.5
RcHm_v2.0_Chr2g0124941 Rosa chinensis HOM05D005522 ORTHO05D007414 1.8e-273 945.7 604 79.1
Ciclev10004603m.g Citrus clementina HOM05D005522 ORTHO05D007414 4.0e-273 944.5 606 79.2
Medtr1g050360 Medicago truncatula HOM05D005522 ORTHO05D007414 4.0e-273 944.5 604 76.2
DCAR_020543 Daucus carota HOM05D005522 ORTHO05D007414 8.8e-273 943.3 553 81.9
Cc06_g18590 Coffea canephora HOM05D005522 ORTHO05D007414 1.1e-272 943.0 604 78.1
MSTRG.19821 Avicennia marina HOM05D005522 ORTHO05D007414 2.6e-272 941.8 604 76.0
FvH4_6g25110 Fragaria vesca HOM05D005522 ORTHO05D007414 2.6e-272 941.8 598 77.6
FAN14G2465 Fragaria x ananassa HOM05D005522 ORTHO05D007414 2.6e-272 941.8 598 77.6
MD00G1074000 Malus domestica HOM05D005522 ORTHO05D007414 2.6e-272 941.8 609 78.8
AT3G47930 Arabidopsis thaliana HOM05D005522 ORTHO05D007414 4.4e-272 941.0 611 77.3
FAN05G4952 Fragaria x ananassa HOM05D005522 ORTHO05D007414 4.4e-272 941.0 598 77.6
VMungo0720G1534 Vigna mungo HOM05D005522 ORTHO05D007414 5.7e-272 940.6 605 77.0
AL5G27240 Arabidopsis lyrata HOM05D005522 ORTHO05D007414 7.5e-272 940.3 611 77.1
FAN02G3261 Fragaria x ananassa HOM05D005522 ORTHO05D007414 1.4e-270 936.0 598 77.3
Phvul.007G247900 Phaseolus vulgaris HOM05D005522 ORTHO05D007414 1.4e-270 936.0 605 76.9
Oeu062462.1 Olea europaea HOM05D005522 ORTHO05D007414 4.1e-270 934.5 600 78.8
Ca_21519_v3 Cicer arietinum L. HOM05D005522 ORTHO05D007414 7.0e-270 933.7 601 75.7
Glyma.02G166300 Glycine max HOM05D005522 ORTHO05D007414 1.2e-269 932.9 608 76.8
Lj5g0015939 Lotus japonicus HOM05D005522 ORTHO05D007414 1.6e-269 932.6 612 75.7
Prupe.7G046300 Prunus persica HOM05D005522 ORTHO05D007414 1.6e-269 932.6 603 78.1
Lalb_Chr02g0156511 Lupinus albus HOM05D005522 ORTHO05D007414 3.5e-269 931.4 605 75.5
SalBow6G2663 Salvia bowleyana HOM05D005522 ORTHO05D007414 5.9e-269 930.6 598 76.3
Lj2A394T33 Lonicera japonica HOM05D005522 ORTHO05D007414 2.2e-268 928.7 604 78.0
MBI03_g28429_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 2.9e-268 928.3 549 82.1
Sed0013105 Sechium edule HOM05D005522 ORTHO05D007414 1.1e-267 926.4 550 82.0
HanXRQChr13g0391861 Helianthus annuus HOM05D005522 ORTHO05D007414 4.2e-267 924.5 598 77.6
Migut.J01682 Erythranthe guttata HOM05D005522 ORTHO05D007414 1.6e-266 922.5 605 75.9
Nitab4.5_0013059g0010 Nicotiana tabacum HOM05D005522 ORTHO05D007414 3.6e-266 921.4 598 76.3
PSO384G4421 Papaver somniferum HOM05D005522 ORTHO05D007414 3.0e-265 918.3 549 80.9
Hund24634 Selenicereus undatus HOM05D005522 ORTHO05D007414 2.0e-264 915.6 551 79.9
FAN09G3441 Fragaria x ananassa HOM05D005522 ORTHO05D007414 1.7e-263 912.5 598 75.8
EL10Ac3g07189 Beta vulgaris HOM05D005522 ORTHO05D007414 4.8e-263 911.0 600 75.2
Solyc10g079470.3 Solanum lycopersicum HOM05D005522 ORTHO05D007414 5.4e-262 907.5 603 76.0
Sopen10g030110 Solanum pennellii HOM05D005522 ORTHO05D007414 5.4e-262 907.5 603 75.8
PGSC0003DMG400008132 Solanum tuberosum HOM05D005522 ORTHO05D007414 7.0e-262 907.1 595 76.0
Lsat_1_v5_gn_5_159221 Lactuca sativa HOM05D005522 ORTHO05D007414 1.0e-260 903.3 614 74.8
Sc19g0008330 Simmondsia chinensis HOM05D005522 ORTHO05D007414 1.3e-260 902.9 593 75.4
MBI03_g36664_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 3.8e-260 901.4 549 80.7
Ah.04g151150 Amaranthus hybridus HOM05D005522 ORTHO05D007414 5.0e-260 901.0 553 79.2
ECA248G3368 Erigeron canadensis HOM05D005522 ORTHO05D007414 8.5e-260 900.2 546 79.1
vmacro07825 Vaccinium macrocarpon HOM05D005522 ORTHO05D007414 1.1e-259 899.8 622 73.6
Sabra16G0043500 Salix brachista HOM05D005522 ORTHO05D007414 1.9e-259 899.0 644 71.3
AUR62040849 Chenopodium quinoa HOM05D005522 ORTHO05D007414 2.7e-258 895.2 552 77.9
Aqoxy1G00339 Aquilegia oxysepala HOM05D005522 ORTHO05D007414 6.1e-258 894.0 564 76.8
Peaxi162Scf00767g00611 Petunia axillaris HOM05D005522 ORTHO05D007414 8.0e-250 867.1 595 73.8
ATR0721G040 Amborella trichopoda HOM05D005522 ORTHO05D007414 7.5e-248 860.5 578 72.8
HPP92_018215 Vanilla planifolia HOM05D005522 ORTHO05D007414 6.4e-247 857.4 596 71.3
Os12g0139600 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 2.3e-244 849.0 549 74.7
Gohir.D11G323800 Gossypium hirsutum HOM05D005522 ORTHO05D007414 3.0e-244 848.6 608 72.2
Glyma.10G104100 Glycine max HOM05D005522 ORTHO05D007414 1.1e-243 846.7 553 76.3
Os11g0143500 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 1.1e-243 846.7 549 74.7
Zm00001eb093120 Zea mays HOM05D005522 ORTHO05D007414 5.2e-241 837.8 547 75.0
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 4.3e-235 818.1 520 75.4
Nitab4.5_0002267g0070 Nicotiana tabacum HOM05D005522 ORTHO05D007414 2.1e-234 815.8 597 70.5
Potri.016G040300 Populus trichocarpa HOM05D005522 ORTHO05D007414 1.3e-228 796.6 513 77.4
GSVIVG01033574001 Vitis vinifera HOM05D005522 ORTHO05D007414 1.6e-226 789.6 444 86.3
CARHR156640 Cardamine hirsuta HOM05D005522 ORTHO05D007414 5.8e-216 754.6 515 75.0
CAN.G641.42 Capsicum annuum HOM05D005522 ORTHO05D007414 1.2e-213 746.9 442 81.9
AUR62030366 Chenopodium quinoa HOM05D005522 ORTHO05D007414 1.1e-209 733.8 444 79.7
Prupe.7G046500 Prunus persica HOM05D005522 ORTHO05D007414 4.9e-207 724.9 513 72.3
QL07p006599 Quercus lobata HOM05D005522 ORTHO05D007414 4.3e-195 685.3 385 86.0
Mapoly0077s0021 Marchantia polymorpha HOM05D005522 ORTHO05D007414 9.3e-182 641.0 553 56.1
Pp3c14_20870 Physcomitrium patens HOM05D005522 ORTHO05D007414 2.0e-176 623.2 566 54.9
SMO146G0252 Selaginella moellendorffii HOM05D005522 ORTHO05D007414 3.6e-165 585.9 542 53.1
CBR_g48422 Chara braunii HOM05D005522 ORTHO05D007414 8.8e-164 581.3 593 52.4
AagrBONN_evm.TU.Sc2ySwM_362.2734 Anthoceros agrestis HOM05D005522 ORTHO05D007414 1.1e-163 580.9 499 56.9
Psat6g119360 Pisum sativum HOM05D005522 ORTHO05D007414 3.6e-149 532.7 367 73.6
MD00G1048800 Malus domestica HOM05D005522 ORTHO05D007414 3.5e-136 489.6 370 71.4
PRCOL_00005871 Prasinoderma coloniale HOM05D005522 ORTHO05D007414 2.3e-132 476.9 506 50.2
CsaV3_4G022170 Cucumis sativus L. HOM05D005522 ORTHO05D007414 9.5e-126 454.9 302 76.8
MCO07G495 Micromonas commoda HOM05D005522 ORTHO05D007414 1.6e-120 437.6 509 46.2
SHI24609 Sapria himalayana HOM05D005522 ORTHO05D007414 3.0e-119 433.3 304 70.1
Dinv04141 Davidia involucrata HOM05D005522 ORTHO05D007414 3.6e-117 426.4 241 85.1
SEGI_02017 Sequoiadendron giganteum HOM05D005522 ORTHO05D007414 8.9e-116 421.8 308 63.3
arahy.Tifrunner.gnm1.ann1.36JCD8 Arachis hypogaea HOM05D005522 ORTHO05D007414 1.6e-112 411.0 245 79.6
arahy.Tifrunner.gnm1.ann1.86D3P6 Arachis hypogaea HOM05D005522 ORTHO05D007414 2.7e-112 410.2 242 80.6
TPR.G8835 Trifolium pratense HOM05D005522 ORTHO05D007414 1.3e-111 407.9 242 79.3
Cre13.g567100 Chlamydomonas reinhardtii HOM05D005522 ORTHO05D007414 3.3e-110 403.3 533 42.2
Prupe.7G046600 Prunus persica HOM05D005522 ORTHO05D007414 3.9e-103 379.8 282 70.2
TPR.G4387 Trifolium pratense HOM05D005522 ORTHO05D007414 4.3e-102 376.3 361 57.9
SHI24612 Sapria himalayana HOM05D005522 ORTHO05D007414 4.2e-97 359.8 228 77.2
BcaB02g10682 Brassica carinata HOM05D005522 ORTHO05D007414 6.0e-96 355.9 429 47.1
QL07p006605 Quercus lobata HOM05D005522 ORTHO05D007414 4.6e-72 276.6 220 70.9
Potri.006G043232 Populus trichocarpa HOM05D005522 ORTHO05D007414 7.9e-64 249.2 144 84.0
Medtr0506s0040 Medicago truncatula HOM05D005522 ORTHO05D007414 6.3e-61 239.6 143 76.9
Oeu013025.1 Olea europaea HOM05D005522 ORTHO05D007414 1.6e-56 224.9 143 79.7
Oeu024729.2 Olea europaea HOM05D005522 ORTHO05D007414 6.3e-45 186.4 142 69.7
MD12G1091400 Malus domestica HOM05D005522 ORTHO05D048680 9.1e-44 182.6 122 73.8
CARHR156650 Cardamine hirsuta HOM05D005522 ORTHO05D007414 7.7e-43 179.5 104 80.8
C03p66920 Brassica napus HOM05D005522 ORTHO05D040474 2.9e-42 177.6 145 62.1
BcaB01g00373 Brassica carinata HOM05D005522 ORTHO05D007414 9.1e-36 156.0 107 76.6
Zm00001eb368650 Zea mays HOM05D001023 ORTHO05D000912 1.0e-34 152.5 98 76.5
Sabra06G0029500 Salix brachista HOM05D005522 ORTHO05D007414 1.2e-22 112.5 105 56.2
Sabra06G0029400 Salix brachista HOM05D002155 ORTHO05D002215 1.0e-18 99.4 74 66.2
BcaB02g10683 Brassica carinata HOM05D005522 ORTHO05D007414 3.0e-15 87.8 57 73.7
Pp3c20_3450 Physcomitrium patens HOM05D005522 ORTHO05D028644 9.8e-14 82.8 172 27.9
Zm00001eb025280 Zea mays HOM05D005522 ORTHO05D048680 1.7e-13 82.0 51 70.6
MD15G1095800 Malus domestica HOM05D001113 ORTHO05D000968 8.6e-10 69.7 211 24.6
Mapoly0097s0030 Marchantia polymorpha HOM05D001113 ORTHO05D000968 8.6e-10 69.7 172 30.2
Phvul.009G257600 Phaseolus vulgaris HOM05D001113 ORTHO05D000968 8.6e-10 69.7 127 30.7
AagrBONN_evm.TU.Sc2ySwM_344.347 Anthoceros agrestis HOM05D001113 ORTHO05D000968 4.3e-09 67.4 180 25.0
MD08G1116100 Malus domestica HOM05D001113 ORTHO05D000968 5.6e-09 67.0 211 24.2
SMO236G0066 Selaginella moellendorffii HOM05D001113 ORTHO05D000968 5.6e-09 67.0 125 28.8
COL.COLO4_18676 Corchorus olitorius HOM05D001113 ORTHO05D000968 7.3e-09 66.6 155 30.3
VMungo1309G1698 Vigna mungo HOM05D001113 ORTHO05D000968 7.3e-09 66.6 190 25.8
Lsat_1_v5_gn_5_33021 Lactuca sativa HOM05D001113 ORTHO05D000968 9.5e-09 66.2 185 24.3
PSO210G3927 Papaver somniferum HOM05D001113 ORTHO05D000968 9.5e-09 66.2 183 25.1
VMungo0251G1166 Vigna mungo HOM05D009237 ORTHO05D007414 1.2e-08 65.9 117 38.5
Cfa013354 Carpinus fangiana HOM05D001113 ORTHO05D000968 1.6e-08 65.5 189 28.6
Prupe.1G450800 Prunus persica HOM05D001113 ORTHO05D000968 1.6e-08 65.5 187 24.1
Haze_21873 Corylus avellana HOM05D001113 ORTHO05D000968 2.1e-08 65.1 197 27.4
MBI09_g04372_MAGBIO Magnolia biondii HOM05D001113 ORTHO05D000968 2.1e-08 65.1 177 28.8
MBI09_g04382_MAGBIO Magnolia biondii HOM05D001113 ORTHO05D000968 2.1e-08 65.1 199 27.6
DCAR_007710 Daucus carota HOM05D001113 ORTHO05D000968 4.7e-08 63.9 189 25.4
MBI09_g04380_MAGBIO Magnolia biondii HOM05D001113 ORTHO05D000968 6.2e-08 63.5 199 26.1
TWI34G0590 Tripterygium wilfordii HOM05D001113 ORTHO05D000968 6.2e-08 63.5 514 21.6
CiPaw.08G024500 Carya illinoinensis HOM05D001113 ORTHO05D000968 8.0e-08 63.2 521 20.9
Lj1g0022611 Lotus japonicus HOM05D001113 ORTHO05D000968 8.0e-08 63.2 170 26.5
Migut.E01517 Erythranthe guttata HOM05D001113 ORTHO05D000968 1.1e-07 62.8 189 27.0
Glyma.19G259400 Glycine max HOM05D001113 ORTHO05D000968 1.1e-07 62.8 172 24.4
CANSAT25G2684 Cannabis sativa HOM05D001113 ORTHO05D000968 1.4e-07 62.4 190 24.7
Cre03.g177600 Chlamydomonas reinhardtii HOM05D001113 ORTHO05D018983 1.4e-07 62.4 239 26.4
PSO210G2808 Papaver somniferum HOM05D001113 ORTHO05D000968 1.4e-07 62.4 181 25.4
ATR0796G122 Amborella trichopoda HOM05D001113 ORTHO05D000968 4.0e-07 60.8 189 25.4
Pp3c6_25270 Physcomitrium patens HOM05D001113 ORTHO05D018983 4.0e-07 60.8 143 32.9
BcaC01g02295 Brassica carinata HOM05D005522 ORTHO05D007414 5.2e-07 60.5 43 67.4
Psat0s1315g0480 Pisum sativum HOM05D001113 ORTHO05D000968 5.2e-07 60.5 121 28.9
Migut.A00080 Erythranthe guttata HOM05D000597 ORTHO05D006307 6.8e-07 60.1 237 23.2
Zm00001eb219950 Zea mays HOM05D001113 ORTHO05D000968 6.8e-07 60.1 132 29.5
SEGI_09990 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 8.9e-07 59.7 132 30.3
AagrBONN_evm.TU.Sc2ySwM_344.344 Anthoceros agrestis HOM05D001113 ORTHO05D000968 1.2e-06 59.3 188 24.5
AT5G56490 Arabidopsis thaliana HOM05D001113 ORTHO05D000968 1.2e-06 59.3 169 26.6
Carub.0008s1697 Capsella rubella HOM05D001113 ORTHO05D000968 1.5e-06 58.9 128 26.6
RcHm_v2.0_Chr6g0305951 Rosa chinensis HOM05D001113 ORTHO05D000968 2.6e-06 58.2 182 22.0
Carub.0001s3062 Capsella rubella HOM05D001113 ORTHO05D000968 4.4e-06 57.4 170 26.5
AUR62030037 Chenopodium quinoa HOM05D001113 ORTHO05D000968 4.4e-06 57.4 174 25.9
Pp3c6_25220 Physcomitrium patens HOM05D001113 ORTHO05D018983 4.4e-06 57.4 181 30.4
AT1G32300 Arabidopsis thaliana HOM05D001113 ORTHO05D000968 5.8e-06 57.0 169 24.3
Cpa.g.sc141.12 Carica papaya HOM05D001113 ORTHO05D000968 7.5e-06 56.6 467 19.9
AUR62004553 Chenopodium quinoa HOM05D001113 ORTHO05D000968 7.5e-06 56.6 171 25.1
AUR62041722 Chenopodium quinoa HOM05D001113 ORTHO05D000968 7.5e-06 56.6 460 21.1
AUR62043519 Chenopodium quinoa HOM05D001113 ORTHO05D000968 7.5e-06 56.6 460 21.1
VMungo1309G0966 Vigna mungo HOM05D001113 ORTHO05D000968 7.5e-06 56.6 154 27.3
AL1G46450 Arabidopsis lyrata HOM05D001113 ORTHO05D000968 9.8e-06 56.2 169 25.4
BolC3t18965H Brassica oleracea HOM05D005522 ORTHO05D040474 9.8e-06 56.2 84 40.5
Cpa.g.sc28.22 Carica papaya HOM05D001113 ORTHO05D000968 9.8e-06 56.2 123 26.8
Potri.018G039600 Populus trichocarpa HOM05D001113 ORTHO05D000968 9.8e-06 56.2 213 22.1
Solyc08g068420.3 Solanum lycopersicum HOM05D001113 ORTHO05D000968 9.8e-06 56.2 146 28.1


User provided reference genes

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