Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 8.9e-162 573.5 291 100.0
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.9e-103 379.8 402 54.7
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 9.7e-100 367.5 403 53.3
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 9.7e-100 367.5 404 53.2
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.3e-99 367.1 404 53.2
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 2.8e-99 365.9 401 53.1
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.1e-98 364.0 402 53.7
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.0e-97 359.8 398 51.8
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.6e-97 359.4 402 53.2
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 3.8e-96 355.5 400 52.2
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.5e-96 354.4 398 52.5
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 3.2e-95 352.4 398 52.3
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.2e-95 352.4 398 52.3
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 4.2e-95 352.1 405 51.9
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 9.4e-95 350.9 404 52.5
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.4e-95 350.9 398 52.3
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.2e-94 350.5 398 53.0
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.1e-94 349.7 411 51.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 3.0e-93 345.9 402 52.0
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 3.0e-93 345.9 401 52.1
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 3.9e-93 345.5 403 51.6
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 6.7e-93 344.7 401 50.1
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-92 344.0 409 50.9
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.1e-92 344.0 403 51.1
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.5e-92 343.6 404 51.0
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 7.4e-92 341.3 401 51.9
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.3e-91 340.5 412 49.5
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.3e-91 340.5 412 49.5
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 2.8e-91 339.3 401 51.6
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.7e-91 339.0 401 50.9
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.1e-90 337.4 416 49.5
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.1e-90 337.4 412 49.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.4e-90 337.0 401 50.1
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.8e-90 336.7 410 50.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 3.1e-90 335.9 399 49.6
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 5.3e-90 335.1 415 48.9
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.2e-89 334.0 415 48.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.2e-89 334.0 399 49.6
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.0e-88 330.9 405 49.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.0e-88 330.9 396 50.3
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.0e-88 330.9 396 50.3
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.9e-88 329.3 333 55.6
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.1e-87 327.4 411 48.9
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.5e-87 327.0 409 47.4
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 2.5e-87 326.2 400 48.2
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 4.2e-87 325.5 400 48.5
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 5.5e-87 325.1 407 48.9
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 5.5e-87 325.1 403 49.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 7.2e-87 324.7 395 50.4
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 7.2e-87 324.7 400 49.0
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 7.2e-87 324.7 404 49.8
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 2.7e-86 322.8 407 48.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 4.7e-86 322.0 401 49.9
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 6.1e-86 321.6 401 49.9
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.0e-85 320.9 396 49.5
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.0e-85 320.9 402 50.2
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 2.3e-85 319.7 400 49.8
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 4.0e-85 318.9 400 48.5
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 5.2e-85 318.5 408 48.5
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 8.8e-85 317.8 401 47.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 2.0e-84 316.6 403 48.9
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.3e-83 313.9 404 47.3
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.3e-83 313.9 407 47.9
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.7e-83 313.5 403 47.6
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.7e-83 313.5 402 48.8
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 2.2e-83 313.2 340 53.2
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.7e-83 312.4 406 47.3
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 3.7e-83 312.4 407 47.4
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.7e-83 312.4 399 48.6
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.7e-83 312.4 399 48.9
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.8e-82 310.1 319 53.3
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.6e-81 307.0 396 47.7
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.7e-81 306.2 401 46.6
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 4.5e-81 305.4 409 46.5
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.0e-80 304.3 409 46.7
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.7e-80 303.5 395 46.1
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 3.8e-80 302.4 311 54.0
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 6.5e-80 301.6 346 49.7
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 6.5e-80 301.6 311 54.7
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 8.5e-80 301.2 402 46.3
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 8.5e-80 301.2 402 46.3
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.9e-79 300.1 406 44.6
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.9e-79 300.1 410 45.9
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 2.5e-79 299.7 410 45.9
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 9.4e-79 297.7 402 46.5
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.4e-79 297.7 428 45.1
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.6e-78 297.0 340 47.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 8.0e-78 294.7 399 46.9
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.4e-77 293.9 411 45.0
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 4.0e-77 292.4 402 46.0
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.0e-76 290.0 394 46.2
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 7.5e-76 288.1 385 45.7
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.2e-73 280.8 310 51.0
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 2.7e-73 279.6 412 45.1
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.5e-73 278.9 335 48.4
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 5.0e-72 275.4 322 50.9
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 6.6e-72 275.0 378 45.5
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 5.5e-71 271.9 473 39.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 7.2e-71 271.6 351 45.9
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.2e-70 270.8 466 40.6
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.6e-70 270.4 377 46.4
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 6.8e-69 265.0 370 48.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 3.4e-68 262.7 343 44.9
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 5.7e-68 261.9 416 40.9
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.2e-67 260.0 402 42.8
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.8e-60 235.3 288 46.2
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.9e-56 222.6 270 47.4
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.4e-53 214.2 269 46.8
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 5.2e-53 212.2 421 36.3
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 2.6e-52 209.9 280 44.3
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 9.8e-52 208.0 304 43.1
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.4e-50 202.2 284 44.4
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 2.1e-49 200.3 337 38.0
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 3.5e-49 199.5 332 40.4
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 3.9e-48 196.1 352 36.1
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.6e-46 190.7 205 54.1
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 6.4e-43 178.7 172 58.7
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.2e-42 176.4 168 58.9
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 2.8e-38 163.3 339 33.3
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.8e-38 163.3 164 56.1
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 6.2e-38 162.2 163 56.4
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.1e-37 159.8 164 56.7
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.2e-37 159.1 164 56.7
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 8.9e-37 158.3 93 80.6
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.1e-34 151.4 121 64.5
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 9.0e-29 131.7 132 60.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 2.9e-27 126.7 94 73.4
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-26 124.8 79 78.5
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.9e-26 124.0 73 79.5
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 1.5e-23 114.4 319 26.3
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 4.3e-23 112.8 129 47.3
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.6e-22 110.9 358 26.0
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.1e-21 108.2 319 27.9
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.5e-20 104.4 127 51.2
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 3.4e-20 103.2 115 54.8
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 7.6e-20 102.1 130 51.5
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 3.2e-18 96.7 133 46.6
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.2e-18 96.7 79 57.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.2e-18 96.3 127 44.9
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.2e-17 94.7 126 46.8
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-17 94.4 124 45.2
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-17 94.4 127 44.1
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-17 94.4 133 45.9
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.1e-16 89.4 114 46.5
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 4.0e-13 79.7 52 71.2
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.9e-13 79.0 56 66.1
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 6.0e-09 65.9 151 34.4
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.0e-08 65.1 100 40.0
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.0e-08 65.1 122 38.5
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 6.7e-08 62.4 45 66.7
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 6.7e-08 62.4 43 74.4
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 6.7e-08 62.4 45 66.7
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 6.7e-08 62.4 45 66.7
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.9e-07 60.8 39 66.7
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 5.7e-07 59.3 101 38.6
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.3e-06 58.2 37 67.6


User provided reference genes

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