Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.158 Carica papaya HOM05D000484 ORTHO05D024848 1.4e-34 149.1 75 100.0
Thecc.05G072000 Theobroma cacao HOM05D000484 ORTHO05D000346 3.9e-21 104.4 76 73.7
Gohir.A04G070100 Gossypium hirsutum HOM05D000484 ORTHO05D000346 9.7e-20 99.8 76 69.7
Glyma.10G060000 Glycine max HOM05D000484 ORTHO05D000346 2.2e-19 98.6 76 69.7
Gohir.D04G108600 Gossypium hirsutum HOM05D000484 ORTHO05D000346 2.2e-19 98.6 76 68.4
Gorai.009G412700 Gossypium raimondii HOM05D000484 ORTHO05D000346 2.2e-19 98.6 76 68.4
Cfa021475 Carpinus fangiana HOM05D000484 ORTHO05D000346 2.8e-19 98.2 76 68.4
Gohir.A01G212200 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.1e-18 96.3 76 68.4
Gohir.D01G200900 Gossypium hirsutum HOM05D000484 ORTHO05D000346 1.1e-18 96.3 76 68.4
Gorai.002G245600 Gossypium raimondii HOM05D000484 ORTHO05D000346 1.1e-18 96.3 76 68.4
Atru.chr8.1746 Acer truncatum HOM05D000484 ORTHO05D000346 1.8e-18 95.5 77 66.2
COL.COLO4_26908 Corchorus olitorius HOM05D000484 ORTHO05D000346 1.8e-18 95.5 76 69.7
VMungo0720G1209 Vigna mungo HOM05D000484 ORTHO05D000346 1.8e-18 95.5 76 68.4
Duzib093G0318 Durio zibethinus HOM05D000484 ORTHO05D000346 2.4e-18 95.1 76 68.4
Glyma.13G146700 Glycine max HOM05D000484 ORTHO05D000346 3.1e-18 94.7 76 67.1
Solyc09g008480.4 Solanum lycopersicum HOM05D000484 ORTHO05D000346 3.1e-18 94.7 78 65.4
Haze_19438 Corylus avellana HOM05D000484 ORTHO05D000346 4.1e-18 94.4 76 65.8
CiPaw.09G002800 Carya illinoinensis HOM05D000484 ORTHO05D000346 7.0e-18 93.6 76 67.1
Ciclev10011083m.g Citrus clementina HOM05D000484 ORTHO05D000346 9.1e-18 93.2 77 67.5
Nitab4.5_0002373g0070 Nicotiana tabacum HOM05D000484 ORTHO05D000346 9.1e-18 93.2 76 63.2
Nitab4.5_0003314g0060 Nicotiana tabacum HOM05D000484 ORTHO05D000346 1.2e-17 92.8 76 63.2
QL07p042195 Quercus lobata HOM05D000484 ORTHO05D000346 1.6e-17 92.4 76 68.4
PGSC0003DMG402003899 Solanum tuberosum HOM05D000484 ORTHO05D024848 1.6e-17 92.4 78 64.1
Sopen09g003310 Solanum pennellii HOM05D000484 ORTHO05D000346 2.0e-17 92.0 78 61.5
THA.LOC104816362 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 2.0e-17 92.0 76 71.1
CAN.G1038.15 Capsicum annuum HOM05D000484 ORTHO05D000346 2.6e-17 91.7 77 62.3
ClCG10G019860 Citrullus lanatus HOM05D000484 ORTHO05D000346 2.6e-17 91.7 76 69.7
Duzib106G0652 Durio zibethinus HOM05D000484 ORTHO05D000346 2.6e-17 91.7 76 65.8
Manes.08G013400 Manihot esculenta HOM05D000484 ORTHO05D000346 4.5e-17 90.9 77 64.9
Lj5g0002009 Lotus japonicus HOM05D000484 ORTHO05D000346 1.3e-16 89.4 76 64.5
CsaV3_3G036240 Cucumis sativus L. HOM05D000484 ORTHO05D000346 1.7e-16 89.0 76 67.1
arahy.Tifrunner.gnm1.ann1.F8G62F Arachis hypogaea HOM05D000484 ORTHO05D000346 3.8e-16 87.8 77 64.9
arahy.Tifrunner.gnm1.ann1.YDD7G1 Arachis hypogaea HOM05D000484 ORTHO05D000346 3.8e-16 87.8 77 64.9
MELO3C009382.2 Cucumis melo HOM05D000484 ORTHO05D000346 3.8e-16 87.8 76 65.8
Nn6g35214 Nelumbo nucifera HOM05D000484 ORTHO05D000346 3.8e-16 87.8 76 64.5
Sabra06G0095400 Salix brachista HOM05D000484 ORTHO05D000346 5.0e-16 87.4 77 62.3
TWI77G0783 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 5.0e-16 87.4 77 63.6
THA.LOC104826922 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 6.5e-16 87.0 62 72.6
Peaxi162Scf00435g01211 Petunia axillaris HOM05D000484 ORTHO05D000346 8.5e-16 86.7 78 60.3
TAR623G0397 Trochodendron aralioides HOM05D000484 ORTHO05D000346 8.5e-16 86.7 79 65.8
Lalb_Chr01g0018581 Lupinus albus HOM05D000484 ORTHO05D000346 1.1e-15 86.3 77 64.9
Hma1.2p1_0547F.1_g176510 Hydrangea macrophylla HOM05D000484 ORTHO05D000346 1.9e-15 85.5 76 63.2
Ca_06428_v3 Cicer arietinum L. HOM05D000484 ORTHO05D000346 4.2e-15 84.3 75 61.3
Nitab4.5_0000349g0060 Nicotiana tabacum HOM05D000484 ORTHO05D000346 4.2e-15 84.3 78 61.5
arahy.Tifrunner.gnm1.ann1.063DHX Arachis hypogaea HOM05D000484 ORTHO05D000346 5.5e-15 84.0 78 65.4
arahy.Tifrunner.gnm1.ann1.8AIE61 Arachis hypogaea HOM05D000484 ORTHO05D000346 5.5e-15 84.0 78 64.1
Thhalv10020082m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 5.5e-15 84.0 62 71.0
Nitab4.5_0000527g0090 Nicotiana tabacum HOM05D000484 ORTHO05D000346 5.5e-15 84.0 78 59.0
Potri.006G121200 Populus trichocarpa HOM05D000484 ORTHO05D000346 1.2e-14 82.8 77 61.0
CANSAT80G1000 Cannabis sativa HOM05D000484 ORTHO05D000346 2.1e-14 82.0 76 59.2
TWI74G0361 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 2.1e-14 82.0 77 59.7
Dinv37342 Davidia involucrata HOM05D000484 ORTHO05D000346 2.7e-14 81.6 79 62.0
CARHR084430 Cardamine hirsuta HOM05D000484 ORTHO05D000346 4.7e-14 80.9 62 69.4
AL3G21180 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 6.1e-14 80.5 76 61.8
Lalb_Chr25g0288871 Lupinus albus HOM05D000484 ORTHO05D000346 8.0e-14 80.1 77 61.0
Sp3g08270 Schrenkiella parvula HOM05D000484 ORTHO05D000346 8.0e-14 80.1 62 69.4
MD12G1106400 Malus domestica HOM05D000484 ORTHO05D000346 1.4e-13 79.3 76 60.5
Sed0005248 Sechium edule HOM05D000484 ORTHO05D000346 3.0e-13 78.2 76 60.5
Sed0025646 Sechium edule HOM05D000484 ORTHO05D000346 3.0e-13 78.2 76 63.2
RcHm_v2.0_Chr3g0470911 Rosa chinensis HOM05D000484 ORTHO05D000346 4.0e-13 77.8 76 56.6
vmacro07321 Vaccinium macrocarpon HOM05D000484 ORTHO05D000346 8.8e-13 76.6 79 59.5
MSTRG.5778 Avicennia marina HOM05D000484 ORTHO05D000346 1.2e-12 76.3 77 57.1
CAN.G501.8 Capsicum annuum HOM05D000484 ORTHO05D000346 1.2e-12 76.3 78 56.4
Prupe.7G125200 Prunus persica HOM05D000484 ORTHO05D000346 1.5e-12 75.9 76 57.9
TPR.G21002 Trifolium pratense HOM05D000484 ORTHO05D000346 1.5e-12 75.9 77 57.1
MSTRG.26676 Avicennia marina HOM05D000484 ORTHO05D000346 3.4e-12 74.7 78 51.3
GSVIVG01033689001 Vitis vinifera HOM05D000484 ORTHO05D000346 4.4e-12 74.3 79 58.2
AT3G09920 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 5.7e-12 73.9 59 67.8
FAN02G2726 Fragaria x ananassa HOM05D000484 ORTHO05D000346 7.5e-12 73.6 76 52.6
Nn2g13864 Nelumbo nucifera HOM05D000484 ORTHO05D000346 7.5e-12 73.6 76 56.6
Carub.0003s0902 Capsella rubella HOM05D000484 ORTHO05D000346 9.7e-12 73.2 59 66.1
Lalb_Chr21g0315111 Lupinus albus HOM05D000484 ORTHO05D000346 9.7e-12 73.2 68 58.8
Rhsim03G0089000 Rhododendron simsii HOM05D000484 ORTHO05D000346 9.7e-12 73.2 79 58.2
TAR369G0124 Trochodendron aralioides HOM05D000484 ORTHO05D000346 9.7e-12 73.2 79 58.2
Aa31LG3G2400 Aethionema arabicum HOM05D000484 ORTHO05D000346 1.3e-11 72.8 76 55.3
FAN05G1985 Fragaria x ananassa HOM05D000484 ORTHO05D000346 1.3e-11 72.8 76 52.6
FAN05G5258 Fragaria x ananassa HOM05D000484 ORTHO05D000346 1.3e-11 72.8 76 52.6
BcaC05g29719 Brassica carinata HOM05D000484 ORTHO05D000346 1.7e-11 72.4 59 66.1
FAN09G1819 Fragaria x ananassa HOM05D000484 ORTHO05D000346 1.7e-11 72.4 76 52.6
Peaxi162Scf00407g00625 Petunia axillaris HOM05D000484 ORTHO05D000346 1.7e-11 72.4 78 51.3
ECA233G3470 Erigeron canadensis HOM05D000484 ORTHO05D000346 2.2e-11 72.0 80 53.8
Sopen10g035700 Solanum pennellii HOM05D000484 ORTHO05D000346 2.2e-11 72.0 78 51.3
Lsat_1_v5_gn_6_28461 Lactuca sativa HOM05D000484 ORTHO05D000346 2.8e-11 71.6 77 50.6
MD04G1088700 Malus domestica HOM05D000484 ORTHO05D000346 2.8e-11 71.6 76 55.3
Solyc10g086320.2 Solanum lycopersicum HOM05D000484 ORTHO05D000346 2.8e-11 71.6 78 51.3
Oeu041476.1 Olea europaea HOM05D000484 ORTHO05D000346 3.7e-11 71.2 78 53.8
FvH4_6g16890 Fragaria vesca HOM05D000484 ORTHO05D000346 4.8e-11 70.9 76 51.3
FAN14G3487 Fragaria x ananassa HOM05D000484 ORTHO05D024848 4.8e-11 70.9 76 51.3
Medtr1g062740 Medicago truncatula HOM05D000484 ORTHO05D000346 6.3e-11 70.5 76 55.3
Aqoxy2G01649 Aquilegia oxysepala HOM05D000484 ORTHO05D000346 8.3e-11 70.1 79 55.7
ECA233G0088 Erigeron canadensis HOM05D000484 ORTHO05D000346 8.3e-11 70.1 80 53.8
SalBow3G0649 Salvia bowleyana HOM05D000484 ORTHO05D000346 8.3e-11 70.1 78 52.6
Psat6g075800 Pisum sativum HOM05D000484 ORTHO05D000346 1.1e-10 69.7 76 53.9
Lj3C990G18 Lonicera japonica HOM05D000484 ORTHO05D000346 1.4e-10 69.3 84 52.4
Lj2A117T95 Lonicera japonica HOM05D000484 ORTHO05D000346 1.8e-10 68.9 87 50.6
Ah.15g091440 Amaranthus hybridus HOM05D000484 ORTHO05D000346 2.4e-10 68.6 79 55.7
Oeu056531.1 Olea europaea HOM05D000484 ORTHO05D000346 2.4e-10 68.6 78 52.6
Dinv35816 Davidia involucrata HOM05D000484 ORTHO05D000346 4.1e-10 67.8 79 59.5
Phvul.001G181400 Phaseolus vulgaris HOM05D000484 ORTHO05D000346 4.1e-10 67.8 75 52.0
PGR004G2655 Punica granatum HOM05D000484 ORTHO05D000346 5.3e-10 67.4 79 53.2
AUR62026951 Chenopodium quinoa HOM05D000484 ORTHO05D000346 7.0e-10 67.0 79 49.4
Cc06_g04570 Coffea canephora HOM05D000484 ORTHO05D000346 7.0e-10 67.0 79 51.9
Actinidia26651 Actinidia chinensis HOM05D000484 ORTHO05D000346 1.6e-09 65.9 79 53.2
AUR62043426 Chenopodium quinoa HOM05D000484 ORTHO05D000346 2.0e-09 65.5 79 51.9
A05p39120 Brassica napus HOM05D000484 ORTHO05D000346 2.7e-09 65.1 60 63.3
BraA05t22701Z Brassica rapa HOM05D000484 ORTHO05D000346 2.7e-09 65.1 60 63.3
AUR62044426 Chenopodium quinoa HOM05D000484 ORTHO05D000346 2.7e-09 65.1 79 50.6
HanXRQChr13g0400701 Helianthus annuus HOM05D000484 ORTHO05D000346 3.5e-09 64.7 80 50.0
Sc20g0005700 Simmondsia chinensis HOM05D000484 ORTHO05D000346 3.5e-09 64.7 77 53.2
C05p58140 Brassica napus HOM05D000484 ORTHO05D000346 7.7e-09 63.5 60 61.7
BolC5t34470H Brassica oleracea HOM05D000484 ORTHO05D000346 7.7e-09 63.5 60 61.7
CSS0050154 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 7.7e-09 63.5 77 50.6
Glyma.03G186300 Glycine max HOM05D000484 ORTHO05D000346 1.0e-08 63.2 61 57.4
EL10Ac7g16689 Beta vulgaris HOM05D000484 ORTHO05D000346 1.3e-08 62.8 79 48.1
Eucgr.A01618 Eucalyptus grandis HOM05D000484 ORTHO05D000346 1.7e-08 62.4 78 51.3
HanXRQChr07g0186211 Helianthus annuus HOM05D000484 ORTHO05D000346 1.7e-08 62.4 78 48.7
PSO339G5360 Papaver somniferum HOM05D000484 ORTHO05D000346 1.7e-08 62.4 80 51.2
PSO801G0700 Papaver somniferum HOM05D000484 ORTHO05D000346 2.9e-08 61.6 80 51.2
CSS0033192 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 8.5e-08 60.1 64 53.1
CSS0038983 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 8.5e-08 60.1 64 53.1
Migut.J00457 Erythranthe guttata HOM05D000484 ORTHO05D000346 1.9e-07 58.9 79 48.1
DCAR_015010 Daucus carota HOM05D000484 ORTHO05D000346 7.2e-07 57.0 71 46.5
VMungo1383G3162 Vigna mungo HOM05D000484 ORTHO05D000346 9.4e-07 56.6 76 48.7


User provided reference genes

Program Settings