Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 2.6e-115 418.7 205 100.0
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 2.2e-74 282.7 171 80.1
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 6.4e-74 281.2 170 77.1
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 8.4e-74 280.8 173 75.1
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.4e-73 280.0 174 75.3
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.4e-73 280.0 174 75.3
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.9e-73 279.6 174 74.7
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.6e-72 276.6 170 75.3
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.7e-72 275.8 173 75.1
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 6.0e-72 274.6 174 74.1
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 7.9e-72 274.2 173 74.0
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 7.9e-72 274.2 174 73.6
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 3.0e-71 272.3 174 74.7
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 3.0e-71 272.3 172 75.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 3.9e-71 271.9 178 73.6
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 6.7e-71 271.2 176 73.9
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 6.7e-71 271.2 176 73.3
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 2.5e-70 269.2 175 73.1
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 5.6e-70 268.1 174 71.3
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 5.6e-70 268.1 175 72.0
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 9.6e-70 267.3 174 71.8
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 9.6e-70 267.3 172 75.0
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.6e-69 266.5 174 71.8
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 2.8e-69 265.8 174 71.3
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 6.2e-69 264.6 174 70.7
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 8.1e-69 264.2 169 73.4
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 1.4e-68 263.5 173 75.1
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 6.9e-68 261.2 173 71.7
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.5e-67 260.0 183 68.3
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.0e-66 257.3 182 71.4
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.7e-66 256.5 175 69.7
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.7e-66 256.5 184 68.5
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 6.5e-66 254.6 177 70.6
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 6.5e-66 254.6 175 71.4
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.5e-65 252.7 174 69.0
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 3.2e-65 252.3 192 65.1
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 3.2e-65 252.3 173 69.9
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 4.2e-65 251.9 173 68.8
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 1.6e-64 250.0 173 69.9
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 2.1e-64 249.6 172 70.9
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 2.1e-64 249.6 173 69.4
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 7.9e-64 247.7 173 68.8
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 3.9e-63 245.4 173 70.5
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 5.1e-63 245.0 183 65.6
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 5.1e-63 245.0 173 68.2
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 5.1e-63 245.0 173 69.4
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.1e-62 243.8 195 64.6
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-62 243.0 172 68.6
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 3.3e-62 242.3 176 68.8
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 7.4e-62 241.1 171 67.8
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.8e-61 239.2 187 64.7
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 3.7e-61 238.8 179 64.8
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 3.7e-61 238.8 173 71.1
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 4.8e-61 238.4 194 61.9
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 6.3e-61 238.0 189 61.9
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 6.3e-61 238.0 169 69.2
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 8.2e-61 237.7 178 64.6
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.1e-60 237.3 173 67.1
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.4e-60 236.9 196 60.7
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 1.8e-60 236.5 161 71.4
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 2.4e-60 236.1 172 66.3
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.1e-60 235.7 176 67.0
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 5.3e-60 235.0 172 66.9
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 6.9e-60 234.6 172 65.1
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 9.0e-60 234.2 178 64.0
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.6e-59 232.6 173 67.1
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 7.6e-59 231.1 172 65.7
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.0e-58 230.7 183 61.7
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.3e-58 230.3 173 63.6
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 1.7e-58 229.9 173 63.6
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.9e-58 229.2 160 68.8
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 1.4e-57 226.9 183 60.7
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.4e-57 226.9 190 59.5
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.9e-57 226.5 199 58.8
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 3.2e-57 225.7 173 64.7
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 4.2e-57 225.3 156 68.6
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 9.3e-57 224.2 152 71.7
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.7e-56 222.6 174 62.1
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 7.9e-56 221.1 175 65.1
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 7.9e-56 221.1 165 65.5
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 8.7e-55 217.6 173 61.3
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.5e-54 216.9 173 62.4
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.9e-54 216.5 149 71.8
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 4.3e-54 215.3 157 67.5
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 4.3e-54 215.3 162 63.0
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 5.7e-54 214.9 175 60.0
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 4.1e-52 208.8 178 60.1
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.6e-51 206.1 173 59.5
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 8.5e-50 201.1 172 58.7
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-49 200.3 118 78.8
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-49 200.3 118 78.8
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.6e-48 196.8 173 57.8
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 7.4e-46 188.0 176 54.5
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.7e-45 186.8 224 45.5
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 6.9e-44 181.4 100 85.0
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.5e-43 180.3 126 69.0
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.0e-43 179.9 174 55.2
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.9e-42 176.0 174 53.4
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.8e-42 175.6 103 79.6
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.4e-41 173.7 174 54.0
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 1.0e-39 167.5 124 66.9
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 3.9e-39 165.6 128 62.5
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 5.7e-38 161.8 110 69.1
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 9.7e-38 161.0 95 80.0
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.7e-37 160.2 176 50.6
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.2e-37 159.8 115 63.5
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 2.8e-37 159.5 152 51.3
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.4e-36 157.1 122 58.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 7.7e-35 151.4 114 59.6
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 5.5e-33 145.2 109 61.5
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.6e-30 136.3 126 56.3
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.8e-29 132.1 126 54.8
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.8e-28 130.2 126 54.0
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.5e-27 125.6 171 43.9
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.3e-26 124.0 102 59.8
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.9e-26 122.9 114 52.6
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 7.5e-22 108.2 142 45.8
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 9.8e-22 107.8 161 41.6
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 9.8e-22 107.8 152 44.1
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 2.8e-21 106.3 182 39.0
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 4.8e-21 105.5 170 41.2
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.5e-19 99.4 53 84.9
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.5e-17 94.0 50 86.0
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.5e-17 93.2 84 58.3
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 9.8e-14 81.3 50 74.0
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.0e-11 73.6 87 43.7
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 5.9e-11 72.0 56 62.5
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 9.5e-09 64.7 75 48.0
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 9.5e-09 64.7 67 49.3
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 8.9e-07 58.2 71 43.7
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 7.5e-06 55.1 62 48.4


User provided reference genes

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