Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.5e-77 292.4 185 100.0
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.1e-53 213.8 191 78.0
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.9e-53 213.0 191 75.4
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 2.1e-52 209.5 191 81.2
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 3.7e-52 208.8 185 65.9
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 3.7e-52 208.8 190 65.8
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.1e-51 207.2 197 62.9
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.8e-51 206.5 191 78.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.4e-51 206.1 185 64.9
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 6.9e-51 204.5 197 71.1
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 6.9e-51 204.5 199 61.8
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 6.9e-51 204.5 191 77.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.5e-50 203.4 191 77.5
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.5e-50 203.4 191 70.2
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.0e-50 203.0 195 60.5
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 5.9e-50 201.4 192 77.6
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.7e-49 199.9 185 65.9
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.2e-49 199.5 185 73.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 3.8e-49 198.7 192 61.5
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 5.0e-49 198.4 189 70.9
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 6.5e-49 198.0 197 68.5
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.1e-48 197.2 191 68.1
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.4e-48 196.8 192 71.4
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.2e-48 195.3 190 70.0
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 5.5e-48 194.9 188 76.6
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.6e-47 193.4 187 65.2
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.7e-47 192.6 189 68.3
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 2.7e-47 192.6 185 68.1
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 6.1e-47 191.4 189 68.3
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 7.9e-47 191.0 186 72.0
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.0e-46 190.7 193 60.1
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.3e-46 190.3 191 72.8
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.3e-46 190.3 185 68.1
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.8e-46 189.9 193 59.6
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 1.8e-46 189.9 192 72.4
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.8e-46 189.9 194 69.1
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 2.3e-46 189.5 189 63.0
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.3e-46 189.5 186 70.4
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 3.0e-46 189.1 198 62.6
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.0e-46 189.1 185 69.7
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 6.7e-46 188.0 188 69.1
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 8.7e-46 187.6 185 61.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 8.7e-46 187.6 186 60.2
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.1e-45 187.2 186 58.1
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.1e-45 187.2 190 67.4
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.5e-45 186.0 185 70.3
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.5e-45 186.0 158 64.6
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 4.3e-45 185.3 186 71.0
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 4.3e-45 185.3 191 63.9
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.7e-45 184.9 185 67.0
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 5.7e-45 184.9 158 63.9
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 7.4e-45 184.5 186 70.4
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 9.7e-45 184.1 190 65.3
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 9.7e-45 184.1 155 71.6
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 9.7e-45 184.1 158 62.7
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.3e-44 183.7 192 70.8
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.6e-44 183.3 194 75.3
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.6e-44 183.3 187 67.4
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 2.2e-44 183.0 157 73.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.8e-44 182.6 189 68.8
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.8e-44 182.6 187 67.4
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 3.7e-44 182.2 186 68.3
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 4.8e-44 181.8 153 67.3
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.8e-44 181.8 185 68.1
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.8e-44 181.8 187 66.3
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 6.3e-44 181.4 186 68.8
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 6.3e-44 181.4 187 66.3
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 8.2e-44 181.0 188 64.4
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.1e-43 180.6 155 70.3
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.1e-43 180.6 187 65.2
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.1e-43 180.6 158 70.3
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-43 180.3 187 65.8
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.8e-43 179.9 188 69.7
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.8e-43 179.9 152 73.0
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.1e-43 179.1 136 80.9
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 4.1e-43 178.7 186 74.2
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 4.1e-43 178.7 186 62.4
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 5.3e-43 178.3 164 67.7
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 6.9e-43 177.9 186 71.5
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 6.9e-43 177.9 187 64.2
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 9.1e-43 177.6 181 72.9
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.1e-43 177.6 187 63.6
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.2e-42 177.2 139 77.7
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.2e-42 177.2 187 65.2
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 2.0e-42 176.4 186 59.1
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 5.9e-42 174.9 140 73.6
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.7e-42 174.5 187 62.6
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.0e-41 174.1 153 75.2
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.7e-41 173.3 186 63.4
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.2e-41 172.9 185 65.9
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.2e-41 172.9 186 63.4
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.2e-41 172.9 185 65.9
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.2e-41 172.9 144 76.4
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 2.9e-41 172.6 141 77.3
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 2.9e-41 172.6 185 65.9
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 2.9e-41 172.6 139 72.7
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 3.8e-41 172.2 189 64.6
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 3.8e-41 172.2 186 66.1
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 3.8e-41 172.2 141 70.9
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 5.0e-41 171.8 186 65.6
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 5.0e-41 171.8 189 54.0
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 8.5e-41 171.0 183 64.5
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 8.5e-41 171.0 191 57.6
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.5e-40 169.5 186 62.4
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.5e-40 169.5 188 62.2
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.5e-40 169.5 152 73.0
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 5.5e-40 168.3 186 65.1
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 7.2e-40 167.9 139 68.3
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.2e-39 167.2 185 65.4
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.2e-39 167.2 185 65.9
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.2e-39 167.2 139 73.4
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.6e-39 166.8 186 69.4
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 4.6e-39 165.2 192 65.1
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 4.4e-37 158.7 220 60.9
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 7.4e-37 157.9 85 88.2
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 9.7e-37 157.5 93 82.8
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.3e-36 157.1 168 57.1
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.1e-35 154.1 187 59.4
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 9.1e-35 151.0 127 65.4
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.5e-34 150.2 140 70.7
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 2.0e-34 149.8 206 51.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.5e-34 148.7 94 80.9
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.2e-33 146.4 124 72.6
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 8.5e-33 144.4 209 44.0
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.7e-28 130.2 75 84.0
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 4.8e-28 128.6 69 84.1
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.1e-27 127.5 70 84.3
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.9e-25 119.4 148 59.5
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.1e-24 117.5 118 76.3
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 8.0e-23 111.3 82 63.4
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.0e-22 110.9 170 57.6
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.2e-21 107.5 106 57.5
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.2e-21 107.5 156 51.9
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 2.0e-21 106.7 150 59.3
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 2.8e-20 102.8 114 53.5
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.1e-19 100.9 80 62.5
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.4e-19 100.5 65 78.5
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.8e-19 100.1 114 67.5
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 7.7e-18 94.7 148 58.8
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.3e-17 94.0 82 53.7
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 5.0e-17 92.0 80 53.8
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 9.4e-16 87.8 53 79.2
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 4.5e-10 68.9 67 50.7
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.6e-07 60.5 109 51.4
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 8.0e-07 58.2 39 59.0


User provided reference genes

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