Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc49.7 Carica papaya HOM05D000955 ORTHO05D003340 5.3e-37 157.5 101 100.0
Gorai.005G102900 Gossypium raimondii HOM05D000955 ORTHO05D003340 1.1e-23 113.2 95 60.0
Gohir.A06G017600 Gossypium hirsutum HOM05D000955 ORTHO05D003340 3.7e-22 108.2 96 60.4
Thecc.08G010100 Theobroma cacao HOM05D000955 ORTHO05D003340 1.1e-21 106.7 94 57.4
COL.COLO4_26486 Corchorus olitorius HOM05D000955 ORTHO05D003340 1.4e-21 106.3 93 55.9
Gohir.D06G015700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.1e-21 104.8 95 57.9
Gohir.D06G015900 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.1e-21 104.8 95 58.9
Gorai.010G018700 Gossypium raimondii HOM05D000955 ORTHO05D003340 5.3e-21 104.4 95 58.9
COL.COLO4_26485 Corchorus olitorius HOM05D000955 ORTHO05D003340 9.1e-21 103.6 93 55.9
Gorai.010G018500 Gossypium raimondii HOM05D000955 ORTHO05D003340 9.1e-21 103.6 95 57.9
Gohir.A06G018100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.9e-19 98.6 97 55.7
Gohir.D06G016000 Gossypium hirsutum HOM05D000955 ORTHO05D003340 6.5e-19 97.4 97 54.6
Gohir.D06G016100 Gossypium hirsutum HOM05D000955 ORTHO05D003340 6.5e-19 97.4 97 56.7
Gorai.010G018800 Gossypium raimondii HOM05D000955 ORTHO05D003340 6.5e-19 97.4 97 54.6
Gohir.A06G017700 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.5e-18 95.5 97 55.7
Gohir.D06G015800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 4.2e-18 94.7 97 53.6
Nitab4.5_0001580g0040 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.2e-18 94.7 96 50.0
Gorai.010G018600 Gossypium raimondii HOM05D000955 ORTHO05D003340 5.5e-18 94.4 97 53.6
Nitab4.5_0007986g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 5.5e-18 94.4 96 50.0
FvH4_2g34550 Fragaria vesca HOM05D000955 ORTHO05D003340 7.2e-18 94.0 94 67.0
FAN15G0770 Fragaria x ananassa HOM05D000955 ORTHO05D003340 7.2e-18 94.0 94 67.0
vmacro21529 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 7.2e-18 94.0 89 48.3
FAN20G1846 Fragaria x ananassa HOM05D000955 ORTHO05D003340 9.4e-18 93.6 94 62.8
FAN27G2801 Fragaria x ananassa HOM05D000955 ORTHO05D003340 9.4e-18 93.6 94 64.9
Lj4C54T13 Lonicera japonica HOM05D000955 ORTHO05D003340 9.4e-18 93.6 98 49.0
Gohir.D02G091750 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.6e-17 92.8 60 71.7
RcHm_v2.0_Chr6g0307621 Rosa chinensis HOM05D000955 ORTHO05D003340 1.6e-17 92.8 94 61.7
RcHm_v2.0_Chr6g0307791 Rosa chinensis HOM05D000955 ORTHO05D003340 1.6e-17 92.8 94 61.7
Nitab4.5_0006312g0020 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.7e-17 92.0 96 49.0
CSS0029458 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D003340 3.6e-17 91.7 89 50.6
Peaxi162Scf00064g00006 Petunia axillaris HOM05D000955 ORTHO05D003340 3.6e-17 91.7 91 52.7
Peaxi162Scf00064g00025 Petunia axillaris HOM05D000955 ORTHO05D003340 6.1e-17 90.9 96 47.9
Dinv39322 Davidia involucrata HOM05D000955 ORTHO05D003340 1.8e-16 89.4 90 70.0
Prupe.1G437300 Prunus persica HOM05D000955 ORTHO05D003340 1.8e-16 89.4 94 48.9
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 1.8e-16 89.4 91 48.4
Potri.014G030900 Populus trichocarpa HOM05D000955 ORTHO05D003340 2.3e-16 89.0 93 51.6
Potri.014G030500 Populus trichocarpa HOM05D000955 ORTHO05D003340 3.9e-16 88.2 93 43.0
Sopen04g032690 Solanum pennellii HOM05D000955 ORTHO05D003340 3.9e-16 88.2 91 47.3
Peaxi162Scf00064g00002 Petunia axillaris HOM05D000955 ORTHO05D003340 5.1e-16 87.8 88 50.0
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 6.7e-16 87.4 91 45.1
RcHm_v2.0_Chr5g0048521 Rosa chinensis HOM05D000955 ORTHO05D003340 8.8e-16 87.0 93 52.7
CAN.G371.28 Capsicum annuum HOM05D000955 ORTHO05D003340 1.5e-15 86.3 93 48.4
Potri.014G030800 Populus trichocarpa HOM05D000955 ORTHO05D003340 2.0e-15 85.9 95 49.5
Migut.C00586 Erythranthe guttata HOM05D000955 ORTHO05D003340 3.3e-15 85.1 95 48.4
Sopen12g030740 Solanum pennellii HOM05D000955 ORTHO05D003340 3.3e-15 85.1 97 45.4
Solyc12g088860.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 5.7e-15 84.3 97 46.4
Sopen12g030750 Solanum pennellii HOM05D000955 ORTHO05D003340 7.4e-15 84.0 96 46.9
Manes.18G035800 Manihot esculenta HOM05D000955 ORTHO05D003340 9.7e-15 83.6 93 45.2
Potri.002G127000 Populus trichocarpa HOM05D000955 ORTHO05D003340 9.7e-15 83.6 93 41.9
RcHm_v2.0_Chr5g0048531 Rosa chinensis HOM05D000955 ORTHO05D003340 9.7e-15 83.6 93 59.1
Sabra14G0021800 Salix brachista HOM05D000955 ORTHO05D003340 1.3e-14 83.2 93 39.8
Gohir.A06G017800 Gossypium hirsutum HOM05D000955 ORTHO05D003340 2.2e-14 82.4 96 45.8
Medtr1g019720 Medicago truncatula HOM05D000955 ORTHO05D003340 2.2e-14 82.4 93 47.3
Solyc12g088850.1 Solanum lycopersicum HOM05D000955 ORTHO05D003340 2.8e-14 82.0 97 44.3
CAN.G1518.1 Capsicum annuum HOM05D000955 ORTHO05D003340 6.3e-14 80.9 98 44.9
Psat6g013520 Pisum sativum HOM05D000955 ORTHO05D003340 6.3e-14 80.9 93 48.4
Rhsim07G0229000 Rhododendron simsii HOM05D000955 ORTHO05D003340 6.3e-14 80.9 91 39.6
ECA232G3034 Erigeron canadensis HOM05D000955 ORTHO05D003340 8.2e-14 80.5 97 40.2
Sabra14G0021600 Salix brachista HOM05D000955 ORTHO05D003340 8.2e-14 80.5 88 47.7
Sabra14G0021900 Salix brachista HOM05D000955 ORTHO05D003340 8.2e-14 80.5 88 47.7
Duzib116G0076 Durio zibethinus HOM05D000955 ORTHO05D003340 1.1e-13 80.1 80 50.0
CAN.G1422.10 Capsicum annuum HOM05D000955 ORTHO05D003340 1.4e-13 79.7 98 44.9
HanXRQChr09g0267871 Helianthus annuus HOM05D000955 ORTHO05D003340 1.4e-13 79.7 94 42.6
Medtr1g019715 Medicago truncatula HOM05D000955 ORTHO05D003340 1.4e-13 79.7 93 47.3
Nn1g04889 Nelumbo nucifera HOM05D000955 ORTHO05D003340 1.4e-13 79.7 91 44.0
Ca_13297_v3 Cicer arietinum L. HOM05D000955 ORTHO05D003340 2.4e-13 79.0 93 47.3
COL.COLO4_26487 Corchorus olitorius HOM05D000955 ORTHO05D003340 2.4e-13 79.0 92 47.8
TPR.G17546 Trifolium pratense HOM05D000955 ORTHO05D003340 2.4e-13 79.0 93 46.2
Aqoxy6G01348 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 4.1e-13 78.2 88 43.2
CAN.G1518.2 Capsicum annuum HOM05D000955 ORTHO05D003340 4.1e-13 78.2 86 44.2
Psat6g013560 Pisum sativum HOM05D000955 ORTHO05D003340 4.1e-13 78.2 93 46.2
Rhsim07G0228900 Rhododendron simsii HOM05D000955 ORTHO05D003340 5.3e-13 77.8 82 45.1
TPR.G17533 Trifolium pratense HOM05D000955 ORTHO05D003340 5.3e-13 77.8 93 45.2
Psat6g013600 Pisum sativum HOM05D000955 ORTHO05D003340 1.6e-12 76.3 93 43.0
DCAR_008791 Daucus carota HOM05D000955 ORTHO05D003340 2.6e-12 75.5 92 43.5
Gorai.010G018900 Gossypium raimondii HOM05D000955 ORTHO05D003340 2.6e-12 75.5 97 49.5
Psat6g013720 Pisum sativum HOM05D000955 ORTHO05D003340 2.6e-12 75.5 94 42.6
Glyma.04G038300 Glycine max HOM05D000955 ORTHO05D003340 3.5e-12 75.1 93 44.1
TPR.G10919 Trifolium pratense HOM05D000955 ORTHO05D003340 4.5e-12 74.7 93 44.1
Glyma.17G242800 Glycine max HOM05D000955 ORTHO05D003340 5.9e-12 74.3 93 43.0
Cc10_g04230 Coffea canephora HOM05D000955 ORTHO05D003340 7.7e-12 73.9 78 47.4
Phvul.009G064500 Phaseolus vulgaris HOM05D000955 ORTHO05D003340 1.3e-11 73.2 93 43.0
Migut.C00587 Erythranthe guttata HOM05D000955 ORTHO05D003340 1.7e-11 72.8 95 43.2
Glyma.06G039300 Glycine max HOM05D000955 ORTHO05D003340 2.2e-11 72.4 93 43.0
MBI02_g02963_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.9e-11 72.0 93 40.9
Psat6g013640 Pisum sativum HOM05D000955 ORTHO05D003340 2.9e-11 72.0 93 41.9
PGSC0003DMG400007985 Solanum tuberosum HOM05D000955 ORTHO05D003340 2.9e-11 72.0 78 44.9
Glyma.06G039400 Glycine max HOM05D000955 ORTHO05D003340 3.8e-11 71.6 93 41.9
Sabra02G0099500 Salix brachista HOM05D000955 ORTHO05D003340 3.8e-11 71.6 100 40.0
Eucgr.F00233 Eucalyptus grandis HOM05D000955 ORTHO05D003340 5.0e-11 71.2 85 43.5
Hma1.2p1_0718F.1_g208350 Hydrangea macrophylla HOM05D000955 ORTHO05D003340 5.0e-11 71.2 91 41.8
Os07g0619200 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 5.0e-11 71.2 83 41.0
MBI06_g36647_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 6.5e-11 70.9 93 41.9
Rhsim07G0229400 Rhododendron simsii HOM05D000955 ORTHO05D003340 6.5e-11 70.9 80 41.2
vmacro04455 Vaccinium macrocarpon HOM05D000955 ORTHO05D003340 8.5e-11 70.5 92 39.1
Peaxi162Scf01890g00029 Petunia axillaris HOM05D000955 ORTHO05D003340 1.1e-10 70.1 90 45.6
Eucgr.F00234 Eucalyptus grandis HOM05D000955 ORTHO05D003340 1.5e-10 69.7 83 42.2
Aqoxy5G01246 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.9e-10 69.3 81 39.5
DCAR_008793 Daucus carota HOM05D000955 ORTHO05D003340 1.9e-10 69.3 82 43.9
Nn5g30250 Nelumbo nucifera HOM05D000955 ORTHO05D003340 1.9e-10 69.3 97 38.1
Migut.K00765 Erythranthe guttata HOM05D000955 ORTHO05D003340 2.5e-10 68.9 57 52.6
DCAR_008792 Daucus carota HOM05D000955 ORTHO05D003340 3.2e-10 68.6 82 41.5
Rhsim07G0229500 Rhododendron simsii HOM05D000955 ORTHO05D003340 3.2e-10 68.6 53 54.7
Rhsim07G0229100 Rhododendron simsii HOM05D000955 ORTHO05D003340 4.2e-10 68.2 82 40.2
Oeu004829.1 Olea europaea HOM05D000955 ORTHO05D003340 5.5e-10 67.8 79 41.8
arahy.Tifrunner.gnm1.ann1.LA24B5 Arachis hypogaea HOM05D000955 ORTHO05D003340 7.2e-10 67.4 89 41.6
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 9.4e-10 67.0 88 43.2
Aqoxy5G01248 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 1.2e-09 66.6 80 41.2
HanXRQChr05g0137741 Helianthus annuus HOM05D000955 ORTHO05D003340 1.2e-09 66.6 86 41.9
Lsat_1_v5_gn_4_125520 Lactuca sativa HOM05D000955 ORTHO05D003340 1.2e-09 66.6 63 47.6
Oeu043559.1 Olea europaea HOM05D000955 ORTHO05D003340 1.2e-09 66.6 52 55.8
Migut.H00440 Erythranthe guttata HOM05D000955 ORTHO05D003340 1.6e-09 66.2 55 54.5
Rhsim07G0229300 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.6e-09 66.2 50 54.0
Nitab4.5_0000453g0120 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.7e-09 64.7 78 43.6
Zm00001eb100840 Zea mays HOM05D000955 ORTHO05D003340 6.1e-09 64.3 96 35.4
CDE06G0816 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 1.0e-08 63.5 82 46.3
CDE08G0020 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 1.0e-08 63.5 81 39.5
Medtr3g101610 Medicago truncatula HOM05D000955 ORTHO05D003340 1.0e-08 63.5 84 41.7
Lsat_1_v5_gn_3_90960 Lactuca sativa HOM05D000955 ORTHO05D003340 1.4e-08 63.2 88 35.2
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 1.4e-08 63.2 87 37.9
Os09g0458900 Oryza sativa ssp. japonica HOM05D000955 ORTHO05D003340 1.8e-08 62.8 93 35.5
SalBow7G0951 Salvia bowleyana HOM05D000955 ORTHO05D003340 1.8e-08 62.8 48 58.3
SalBow7G3079 Salvia bowleyana HOM05D000955 ORTHO05D003340 1.8e-08 62.8 44 63.6
Dinv39861 Davidia involucrata HOM05D000955 ORTHO05D003340 8.8e-08 60.5 52 48.1
HanXRQChr12g0378991 Helianthus annuus HOM05D000955 ORTHO05D003340 8.8e-08 60.5 88 35.2
MSTRG.3423 Avicennia marina HOM05D000955 ORTHO05D003340 1.1e-07 60.1 57 47.4
Cpa.g.sc55.161 Carica papaya HOM05D000955 ORTHO05D003340 1.5e-07 59.7 55 47.3
Nn5g30251 Nelumbo nucifera HOM05D000955 ORTHO05D003340 1.5e-07 59.7 86 37.2
ECA246G2186 Erigeron canadensis HOM05D000955 ORTHO05D003340 2.0e-07 59.3 88 35.2
HanXRQChr12g0378981 Helianthus annuus HOM05D000955 ORTHO05D003340 2.6e-07 58.9 88 35.2
Aqoxy5G01245 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 3.3e-07 58.5 60 46.7
SalBow5G1664 Salvia bowleyana HOM05D000955 ORTHO05D003340 3.3e-07 58.5 92 35.9
SalBow5G5547 Salvia bowleyana HOM05D000955 ORTHO05D003340 3.3e-07 58.5 92 35.9
Zm00001eb109460 Zea mays HOM05D000955 ORTHO05D003340 3.3e-07 58.5 90 34.4
Atru.chr3.343 Acer truncatum HOM05D000955 ORTHO05D003340 4.4e-07 58.2 54 42.6
ECA246G3551 Erigeron canadensis HOM05D000955 ORTHO05D003340 4.4e-07 58.2 81 40.7
Gorai.010G019000 Gossypium raimondii HOM05D000955 ORTHO05D003340 4.4e-07 58.2 44 61.4
TPR.G28116 Trifolium pratense HOM05D000955 ORTHO05D003340 5.7e-07 57.8 82 40.2
ECA246G1907 Erigeron canadensis HOM05D000955 ORTHO05D003340 7.5e-07 57.4 88 34.1
HanXRQChr15g0473701 Helianthus annuus HOM05D000955 ORTHO05D003340 7.5e-07 57.4 88 34.1
FvH4_1g15920 Fragaria vesca HOM05D000955 ORTHO05D003340 9.7e-07 57.0 52 50.0
FAN19G2583 Fragaria x ananassa HOM05D000955 ORTHO05D003340 9.7e-07 57.0 52 50.0
Potri.014G030700 Populus trichocarpa HOM05D000955 ORTHO05D003340 9.7e-07 57.0 79 39.2
Gohir.D06G016150 Gossypium hirsutum HOM05D000955 ORTHO05D003340 1.3e-06 56.6 44 59.1
Thecc.01G054500 Theobroma cacao HOM05D000955 ORTHO05D003340 1.3e-06 56.6 59 44.1
HPP92_004112 Vanilla planifolia HOM05D000955 ORTHO05D003340 1.3e-06 56.6 77 39.0
CDE10G0233 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 1.7e-06 56.2 77 40.3
Lj4C144G12 Lonicera japonica HOM05D002458 ORTHO05D002603 1.7e-06 56.2 52 44.2
CiPaw.01G019000 Carya illinoinensis HOM05D000955 ORTHO05D003340 2.2e-06 55.8 58 43.1
Lsat_1_v5_gn_3_90980 Lactuca sativa HOM05D000955 ORTHO05D003340 2.2e-06 55.8 88 31.8
MBI02_g02964_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.2e-06 55.8 80 32.5
unitig_32.g10766 Utricularia gibba HOM05D000939 ORTHO05D000745 2.2e-06 55.8 76 36.8
Aqoxy5G01247 Aquilegia oxysepala HOM05D000955 ORTHO05D003340 3.7e-06 55.1 80 35.0
FAN23G0571 Fragaria x ananassa HOM05D000955 ORTHO05D003340 3.7e-06 55.1 51 49.0
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 3.7e-06 55.1 50 50.0
Prupe.7G134600 Prunus persica HOM05D000955 ORTHO05D003340 3.7e-06 55.1 53 43.4
Manes.18G035900 Manihot esculenta HOM05D000955 ORTHO05D003340 4.8e-06 54.7 83 33.7
DCAR_010900 Daucus carota HOM05D000955 ORTHO05D003340 6.3e-06 54.3 56 41.1
Psat5g043640 Pisum sativum HOM05D000955 ORTHO05D003340 6.3e-06 54.3 80 38.8
RcHm_v2.0_Chr2g0105311 Rosa chinensis HOM05D000955 ORTHO05D003340 6.3e-06 54.3 52 46.2
Manes.13G127500 Manihot esculenta HOM05D000955 ORTHO05D003340 8.2e-06 53.9 52 40.4


User provided reference genes

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