Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 9.3e-145 516.9 273 100.0
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 6.5e-114 414.5 271 80.8
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 2.7e-112 409.1 274 79.6
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 7.9e-112 407.5 271 80.1
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 4.4e-110 401.7 271 77.1
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 5.7e-110 401.4 271 79.0
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 5.7e-110 401.4 271 78.6
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 7.4e-110 401.0 271 77.1
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.1e-108 397.1 271 76.0
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.4e-108 396.7 271 75.6
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.4e-108 396.7 271 75.3
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 3.1e-108 395.6 271 75.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 4.1e-108 395.2 271 78.2
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 5.3e-108 394.8 271 75.6
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.2e-107 393.7 271 76.8
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.6e-107 392.5 271 74.9
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 4.5e-107 391.7 271 74.5
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.3e-106 390.2 277 75.5
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.7e-106 389.8 271 77.1
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.9e-106 389.0 271 76.8
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 3.8e-106 388.7 273 74.4
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 5.0e-106 388.3 272 75.4
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.1e-105 387.1 271 76.4
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.9e-105 386.3 271 74.2
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 9.4e-105 384.0 271 74.9
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 2.1e-104 382.9 271 76.8
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 2.7e-104 382.5 271 74.5
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 8.0e-104 380.9 270 73.7
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.8e-103 379.8 271 74.9
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 3.0e-103 379.0 272 77.6
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.5e-102 376.7 266 75.9
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.6e-102 375.9 266 74.4
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 4.8e-101 371.7 271 72.7
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 8.2e-101 370.9 270 71.9
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.1e-100 370.5 281 74.0
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.4e-100 370.2 271 75.3
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.4e-100 369.4 261 74.7
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 5.3e-100 368.2 269 71.4
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 7.0e-100 367.9 273 72.2
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 9.1e-100 367.5 271 72.0
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.6e-99 366.7 336 60.7
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 4.5e-99 365.2 271 72.0
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 2.2e-98 362.8 271 72.0
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 5.0e-98 361.7 276 69.2
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.5e-98 361.3 287 66.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 6.5e-98 361.3 271 70.8
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.5e-97 360.1 273 72.9
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 5.5e-97 358.2 273 72.5
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 7.2e-97 357.8 272 70.6
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.1e-96 356.3 277 69.0
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 2.7e-96 355.9 264 71.6
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 3.6e-96 355.5 305 63.9
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 4.7e-96 355.1 270 69.6
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.1e-96 354.8 277 69.0
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.1e-96 354.8 277 69.0
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 8.0e-96 354.4 271 69.7
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 8.0e-96 354.4 272 71.0
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 3.0e-95 352.4 274 70.4
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 5.2e-95 351.7 274 70.4
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.2e-94 350.5 264 71.2
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-94 350.1 277 68.2
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 2.0e-94 349.7 271 67.9
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.6e-94 349.4 260 72.3
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 3.3e-94 349.0 273 69.2
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 7.5e-94 347.8 274 70.1
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 4.8e-93 345.1 272 70.2
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 4.8e-93 345.1 270 67.0
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.1e-92 344.0 271 69.0
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 2.7e-91 339.3 271 67.2
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-91 339.0 287 64.8
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 4.5e-91 338.6 274 69.0
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 5.9e-91 338.2 272 67.6
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.0e-90 337.4 267 67.8
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 2.2e-90 336.3 273 65.9
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.2e-90 336.3 272 67.3
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.5e-89 332.8 271 65.3
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.5e-89 332.8 248 70.2
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 3.2e-89 332.4 271 66.4
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.6e-88 330.1 271 63.8
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.1e-88 329.7 271 66.4
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 2.1e-88 329.7 270 65.9
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 2.3e-87 326.2 267 66.7
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 3.4e-86 322.4 248 70.6
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.4e-84 316.2 263 65.4
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 7.0e-84 314.7 271 64.6
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.0e-82 308.5 220 73.6
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 5.7e-78 295.0 271 60.9
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.8e-77 292.7 275 57.5
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.8e-76 290.0 248 62.9
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 1.6e-75 287.0 287 58.5
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.2e-72 277.3 271 59.8
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.6e-72 276.9 257 59.9
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 6.8e-71 271.6 269 53.2
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 6.0e-67 258.5 192 68.8
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.3e-66 256.5 248 60.1
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 2.1e-64 250.0 271 53.5
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 4.7e-64 248.8 182 69.8
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.4e-63 247.3 249 58.6
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-60 237.3 194 62.9
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.8e-55 220.3 263 47.1
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 6.8e-55 218.4 215 61.4
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 8.3e-53 211.5 266 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 3.5e-51 206.1 270 43.3
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.7e-50 203.8 138 73.9
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 8.9e-47 191.4 230 45.7
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 8.4e-45 184.9 341 39.9
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.8e-37 159.5 130 63.8
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.8e-37 159.5 113 76.1
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.4e-37 158.3 113 75.2
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 7.8e-35 151.8 106 74.5
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.0e-34 151.4 141 58.2
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 3.0e-34 149.8 112 71.4
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 6.6e-34 148.7 149 59.7
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 3.6e-32 142.9 118 64.4
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 2.0e-30 137.1 84 81.0
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.3e-29 134.4 92 71.7
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 5.4e-28 129.0 155 51.6
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 2.7e-27 126.7 107 68.2
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 6.0e-27 125.6 263 33.5
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.9e-25 120.6 106 62.3
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 3.3e-25 119.8 108 63.0
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.6e-24 117.5 110 60.9
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.6e-24 117.5 74 82.4
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 4.8e-24 115.9 252 31.3
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 3.1e-23 113.2 74 82.4
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.2e-19 101.3 124 50.0
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.1e-19 100.5 80 67.5
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.9e-19 98.6 143 44.8
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.3e-18 97.8 66 72.7
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 8.7e-18 95.1 103 55.3
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-17 94.7 54 87.0
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 4.3e-17 92.8 62 71.0
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 2.1e-11 73.9 82 53.7
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.4e-07 61.2 98 38.8
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.2e-06 58.2 77 46.8


User provided reference genes

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