Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc49.1 Carica papaya HOM05D002103 ORTHO05D004020 4.3e-69 264.6 141 100.0
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 2.3e-38 162.5 132 65.2
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 1.5e-37 159.8 134 64.2
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 5.7e-37 157.9 127 65.4
Sabra02G0100000 Salix brachista HOM05D002103 ORTHO05D004020 5.7e-37 157.9 141 62.4
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 9.6e-37 157.1 134 59.0
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 1.3e-36 156.8 132 62.9
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 1.1e-35 153.7 120 65.8
CiPaw.15G061600 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.4e-35 153.3 120 66.7
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 2.4e-35 152.5 134 61.9
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 4.1e-35 151.8 134 59.7
Dinv39328 Davidia involucrata HOM05D002103 ORTHO05D004020 5.3e-35 151.4 135 58.5
Duzib041G0561 Durio zibethinus HOM05D002103 ORTHO05D004020 9.0e-35 150.6 131 61.8
Manes.05G171920 Manihot esculenta HOM05D002103 ORTHO05D004020 9.0e-35 150.6 135 60.0
Manes.05G171940 Manihot esculenta HOM05D002103 ORTHO05D004020 9.0e-35 150.6 135 60.0
Manes.05G172000 Manihot esculenta HOM05D002103 ORTHO05D004020 9.0e-35 150.6 135 60.0
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.2e-34 150.2 120 65.0
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 1.2e-34 150.2 135 61.5
vmacro21537 Vaccinium macrocarpon HOM05D002103 ORTHO05D004020 1.2e-34 150.2 134 59.0
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 1.5e-34 149.8 134 60.4
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 2.0e-34 149.4 121 64.5
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 2.6e-34 149.1 136 59.6
Gorai.010G018100 Gossypium raimondii HOM05D002103 ORTHO05D004020 2.6e-34 149.1 118 65.3
TWI56G0490 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 2.6e-34 149.1 136 59.6
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 3.4e-34 148.7 135 60.7
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.7e-33 146.4 117 62.4
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 1.7e-33 146.4 135 59.3
QL02p005375 Quercus lobata HOM05D002103 ORTHO05D004020 6.5e-33 144.4 116 63.8
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 1.4e-32 143.3 130 59.2
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 1.9e-32 142.9 135 56.3
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 1.9e-32 142.9 118 63.6
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 2.5e-32 142.5 135 57.8
Sed0011304 Sechium edule HOM05D002103 ORTHO05D004020 2.5e-32 142.5 134 60.4
THA.LOC104803681 Tarenaya hassleriana HOM05D002103 ORTHO05D004020 2.5e-32 142.5 132 58.3
TWI36G1154 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 3.2e-32 142.1 136 60.3
Migut.N02702 Erythranthe guttata HOM05D002103 ORTHO05D004020 5.5e-32 141.4 132 57.6
Sed0003893 Sechium edule HOM05D002103 ORTHO05D004020 1.6e-31 139.8 134 58.2
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 2.1e-31 139.4 135 57.8
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 1.0e-30 137.1 134 56.7
ClCG08G015730 Citrullus lanatus HOM05D002103 ORTHO05D004020 3.9e-30 135.2 165 50.3
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 3.9e-30 135.2 135 58.5
Gohir.A01G118700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 8.7e-30 134.0 133 57.1
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 1.1e-29 133.7 135 57.8
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 2.5e-29 132.5 134 51.5
PGR083G1022 Punica granatum HOM05D002103 ORTHO05D004020 2.5e-29 132.5 134 54.5
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 3.3e-29 132.1 135 56.3
Carub.0007s0711 Capsella rubella HOM05D002103 ORTHO05D004020 5.7e-29 131.3 137 56.2
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 5.7e-29 131.3 136 52.9
FvH4_2g34620 Fragaria vesca HOM05D002103 ORTHO05D004020 7.4e-29 131.0 135 56.3
FAN20G2977 Fragaria x ananassa HOM05D002103 ORTHO05D004020 1.3e-28 130.2 145 53.1
AL7G18190 Arabidopsis lyrata HOM05D002103 ORTHO05D004020 2.2e-28 129.4 136 57.4
Cc10_g04320 Coffea canephora HOM05D002103 ORTHO05D004020 2.2e-28 129.4 140 51.4
Oeu009550.1 Olea europaea HOM05D002103 ORTHO05D004020 2.2e-28 129.4 134 55.2
BraA01t00472Z Brassica rapa HOM05D002198 ORTHO05D004020 2.8e-28 129.0 135 56.3
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 2.8e-28 129.0 131 57.3
BcaB03g12802 Brassica carinata HOM05D002103 ORTHO05D004020 3.7e-28 128.6 133 53.4
A08p17650 Brassica napus HOM05D002103 ORTHO05D004020 3.7e-28 128.6 133 53.4
BraA08t33716Z Brassica rapa HOM05D002103 ORTHO05D004020 3.7e-28 128.6 133 53.4
Gorai.002G131200 Gossypium raimondii HOM05D002103 ORTHO05D004020 3.7e-28 128.6 133 55.6
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 3.7e-28 128.6 136 53.7
BcaC01g00993 Brassica carinata HOM05D002103 ORTHO05D004020 4.8e-28 128.3 133 53.4
BcaC09g52145 Brassica carinata HOM05D002103 ORTHO05D004020 4.8e-28 128.3 135 55.6
C03p86710 Brassica napus HOM05D002103 ORTHO05D004020 4.8e-28 128.3 133 53.4
BolC1t00510H Brassica oleracea HOM05D002103 ORTHO05D004020 4.8e-28 128.3 135 55.6
BolC3t20967H Brassica oleracea HOM05D002103 ORTHO05D004020 4.8e-28 128.3 133 53.4
Ah.05g168830 Amaranthus hybridus HOM05D002103 ORTHO05D004020 6.3e-28 127.9 135 51.1
A01p04900 Brassica napus HOM05D002198 ORTHO05D004020 6.3e-28 127.9 135 55.6
FAN27G3124 Fragaria x ananassa HOM05D002103 ORTHO05D004020 6.3e-28 127.9 145 52.4
BolC3t20965H Brassica oleracea HOM05D002103 ORTHO05D004020 1.8e-27 126.3 133 53.4
Eucgr.F00240 Eucalyptus grandis HOM05D002103 ORTHO05D004020 2.4e-27 125.9 117 57.3
Gohir.D01G106900 Gossypium hirsutum HOM05D002103 ORTHO05D004020 2.4e-27 125.9 120 56.7
MSTRG.24326 Avicennia marina HOM05D002103 ORTHO05D004020 3.1e-27 125.6 134 53.7
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 3.1e-27 125.6 134 52.2
BcaC09g52142 Brassica carinata HOM05D002103 ORTHO05D004020 5.3e-27 124.8 136 55.1
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 6.9e-27 124.4 123 56.9
AT4G33380 Arabidopsis thaliana HOM05D002103 ORTHO05D004020 9.1e-27 124.0 136 56.6
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 9.1e-27 124.0 132 45.5
RcHm_v2.0_Chr6g0307681 Rosa chinensis HOM05D002103 ORTHO05D004020 9.1e-27 124.0 131 51.9
DCAR_019463 Daucus carota HOM05D002103 ORTHO05D004020 2.0e-26 122.9 134 48.5
AUR62039305 Chenopodium quinoa HOM05D002103 ORTHO05D004020 4.5e-26 121.7 132 48.5
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 5.9e-26 121.3 123 56.1
Lj5g0018432 Lotus japonicus HOM05D002103 ORTHO05D004020 1.7e-25 119.8 123 54.5
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 1.7e-25 119.8 134 47.8
Glyma.06G038500 Glycine max HOM05D002103 ORTHO05D004020 2.9e-25 119.0 123 56.1
HanXRQChr02g0037661 Helianthus annuus HOM05D002103 ORTHO05D004020 3.8e-25 118.6 119 47.9
AUR62022429 Chenopodium quinoa HOM05D002103 ORTHO05D004020 5.0e-25 118.2 132 47.7
Psat6g012640 Pisum sativum HOM05D002103 ORTHO05D004020 5.0e-25 118.2 124 54.8
Medtr1g019780 Medicago truncatula HOM05D002103 ORTHO05D004020 8.5e-25 117.5 130 53.8
SalBow7G3772 Salvia bowleyana HOM05D002103 ORTHO05D004020 1.1e-24 117.1 133 51.1
Lalb_Chr23g0266991 Lupinus albus HOM05D002103 ORTHO05D004020 1.4e-24 116.7 123 53.7
EL10Ac1g01784 Beta vulgaris HOM05D002103 ORTHO05D004020 1.9e-24 116.3 121 49.6
Glyma.04G037600 Glycine max HOM05D002103 ORTHO05D004020 1.9e-24 116.3 123 55.3
Glyma.14G082000 Glycine max HOM05D002103 ORTHO05D004020 1.9e-24 116.3 115 56.5
Glyma.17G243300 Glycine max HOM05D002103 ORTHO05D004020 2.5e-24 115.9 125 54.4
MBI02_g17341_MAGBIO Magnolia biondii HOM05D002103 ORTHO05D004020 3.2e-24 115.5 147 43.5
Phvul.001G021000 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 3.2e-24 115.5 125 54.4
Peaxi162Scf00929g00314 Petunia axillaris HOM05D002103 ORTHO05D004020 9.4e-24 114.0 125 49.6
TPR.G13687 Trifolium pratense HOM05D002103 ORTHO05D004020 1.2e-23 113.6 137 52.6
CAN.G371.35 Capsicum annuum HOM05D002103 ORTHO05D004020 1.6e-23 113.2 134 47.0
VMungo0647G0899 Vigna mungo HOM05D002103 ORTHO05D004020 1.6e-23 113.2 122 55.7
Lsat_1_v5_gn_1_20261 Lactuca sativa HOM05D002103 ORTHO05D004020 2.1e-23 112.8 134 46.3
Lalb_Chr22g0355191 Lupinus albus HOM05D002103 ORTHO05D004020 4.6e-23 111.7 114 55.3
Nitab4.5_0001024g0010 Nicotiana tabacum HOM05D002103 ORTHO05D004020 6.1e-23 111.3 117 47.9
PGSC0003DMG400007986 Solanum tuberosum HOM05D002103 ORTHO05D004020 1.0e-22 110.5 134 45.5
CSS0022665 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 2.3e-22 109.4 134 46.3
arahy.Tifrunner.gnm1.ann1.Z2DAXP Arachis hypogaea HOM05D002103 ORTHO05D004020 3.9e-22 108.6 110 54.5
Lalb_Chr14g0368771 Lupinus albus HOM05D002103 ORTHO05D004020 3.9e-22 108.6 123 48.8
arahy.Tifrunner.gnm1.ann1.75Q1P4 Arachis hypogaea HOM05D002103 ORTHO05D004020 2.0e-21 106.3 110 53.6
CSS0001953 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 2.0e-21 106.3 134 50.0
Prupe.3G111800 Prunus persica HOM05D002103 ORTHO05D004020 3.3e-21 105.5 112 53.6
Nitab4.5_0000686g0060 Nicotiana tabacum HOM05D002103 ORTHO05D004020 7.4e-21 104.4 135 43.7
Nitab4.5_0001101g0080 Nicotiana tabacum HOM05D002103 ORTHO05D004020 7.4e-21 104.4 136 44.1
CAN.G52.6 Capsicum annuum HOM05D002103 ORTHO05D004020 2.8e-20 102.4 133 43.6
Aqoxy6G01360 Aquilegia oxysepala HOM05D002103 ORTHO05D004020 6.3e-20 101.3 127 46.5
TPR.G35873 Trifolium pratense HOM05D002103 ORTHO05D004020 4.1e-19 98.6 122 48.4
ATR0100G056 Amborella trichopoda HOM05D002103 ORTHO05D004020 6.9e-19 97.8 143 44.1
Medtr3g101480 Medicago truncatula HOM05D002103 ORTHO05D004020 6.9e-19 97.8 122 48.4
Psat0s3123g0080 Pisum sativum HOM05D002103 ORTHO05D004020 9.1e-19 97.4 109 53.2
Potri.002G127700 Populus trichocarpa HOM05D002103 ORTHO05D004020 9.1e-19 97.4 79 62.0
Sopen07g013400 Solanum pennellii HOM05D002103 ORTHO05D004020 2.6e-18 95.9 132 41.7
CDE02G3402 Ceratophyllum demersum HOM05D002103 ORTHO05D004020 5.9e-18 94.7 136 41.2
RcHm_v2.0_Chr6g0307521 Rosa chinensis HOM05D002103 ORTHO05D004020 4.2e-16 88.6 119 42.9
Duzib116G0153 Durio zibethinus HOM05D002103 ORTHO05D004020 1.2e-15 87.0 73 60.3
Aa31LG3G7420 Aethionema arabicum HOM05D002103 ORTHO05D004020 1.6e-15 86.7 137 45.3
SEGI_28946 Sequoiadendron giganteum HOM05D002103 ORTHO05D004020 7.9e-15 84.3 117 40.2
HPP92_027223 Vanilla planifolia HOM05D002103 ORTHO05D004020 8.8e-14 80.9 121 41.3
Os06g0214100 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 3.3e-13 79.0 124 41.1
Zm00001eb255700 Zea mays HOM05D002103 ORTHO05D004020 4.4e-13 78.6 121 43.8
Os02g0761600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 1.3e-12 77.0 138 40.6
Zm00001eb373130 Zea mays HOM05D002103 ORTHO05D004020 6.3e-12 74.7 129 35.7
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 1.8e-11 73.2 125 36.0
Gorai.010G077200 Gossypium raimondii HOM05D002103 ORTHO05D004020 3.1e-11 72.4 68 51.5
PSO541G4087 Papaver somniferum HOM05D002103 ORTHO05D004020 4.1e-11 72.0 78 43.6
PSO675G6562 Papaver somniferum HOM05D002103 ORTHO05D004020 4.1e-11 72.0 78 43.6
Solyc04g079160.4 Solanum lycopersicum HOM05D002103 ORTHO05D004020 7.0e-11 71.2 89 41.6
arahy.Tifrunner.gnm1.ann1.3IZ1KA Arachis hypogaea HOM05D002103 ORTHO05D004020 9.1e-11 70.9 70 52.9
arahy.Tifrunner.gnm1.ann1.II6H71 Arachis hypogaea HOM05D002103 ORTHO05D004020 9.1e-11 70.9 70 52.9
arahy.Tifrunner.gnm1.ann1.YT15EQ Arachis hypogaea HOM05D002103 ORTHO05D004020 9.1e-11 70.9 70 52.9
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 3.5e-10 68.9 93 40.9
Hund17586 Selenicereus undatus HOM05D002103 ORTHO05D004020 4.5e-10 68.6 83 41.0
Rhsim06G0048300 Rhododendron simsii HOM05D002103 ORTHO05D004020 1.0e-09 67.4 69 49.3
Gohir.D12G161700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.3e-09 67.0 68 50.0
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 1.3e-09 67.0 145 29.0
RcHm_v2.0_Chr6g0258511 Rosa chinensis HOM05D002103 ORTHO05D004020 1.7e-09 66.6 99 37.4
Zm00001eb228380 Zea mays HOM05D002103 ORTHO05D004020 5.0e-09 65.1 115 34.8
Lsat_1_v5_gn_6_113661 Lactuca sativa HOM05D002103 ORTHO05D004020 1.2e-07 60.5 84 42.9
Lj4A775T63 Lonicera japonica HOM05D002103 ORTHO05D004020 4.7e-07 58.5 96 38.5
SalBow3G3013 Salvia bowleyana HOM05D002103 ORTHO05D004020 1.0e-06 57.4 69 43.5
Zm00001eb288960 Zea mays HOM05D002103 ORTHO05D001928 1.4e-06 57.0 145 29.7
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 3.0e-06 55.8 125 29.6
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 6.7e-06 54.7 135 32.6


User provided reference genes

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