Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 1.3e-165 586.3 280 100.0
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.6e-134 482.3 280 80.7
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 5.8e-134 481.1 280 80.4
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 8.4e-133 477.2 280 80.0
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 4.2e-132 474.9 281 78.3
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.7e-131 472.2 280 79.3
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 3.9e-130 468.4 284 77.5
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 3.9e-130 468.4 282 79.1
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.3e-128 463.4 280 77.5
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.3e-128 463.4 280 78.6
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 3.6e-128 461.8 280 78.2
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 6.9e-127 457.6 280 76.8
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 9.0e-127 457.2 280 77.5
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.5e-126 456.4 282 76.2
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.0e-126 456.1 280 76.4
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 3.4e-126 455.3 280 75.7
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 3.4e-126 455.3 280 76.8
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 5.8e-126 454.5 284 75.4
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 7.6e-126 454.1 281 76.9
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.7e-125 453.0 280 76.4
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.7e-125 453.0 281 76.5
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.7e-125 453.0 281 76.5
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 2.2e-125 452.6 280 75.7
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 2.9e-125 452.2 280 73.9
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 6.4e-125 451.1 280 76.4
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 8.4e-125 450.7 280 76.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.4e-124 449.9 280 75.7
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.9e-124 449.5 281 76.2
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.9e-124 449.5 281 76.2
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 2.4e-124 449.1 280 75.7
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 3.2e-124 448.7 280 75.0
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 4.2e-124 448.4 281 75.8
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 5.4e-124 448.0 278 75.9
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 2.1e-123 446.0 280 74.3
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 2.3e-122 442.6 282 74.8
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 3.0e-122 442.2 282 74.5
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 5.1e-122 441.4 323 68.4
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 6.6e-122 441.0 280 74.6
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 6.6e-122 441.0 280 74.6
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 6.6e-122 441.0 280 74.6
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 8.7e-122 440.7 280 72.9
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 3.3e-121 438.7 280 73.2
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 7.3e-121 437.6 282 72.3
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 1.6e-120 436.4 279 73.8
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 3.6e-120 435.3 281 73.0
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 4.8e-120 434.9 281 73.3
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 6.2e-120 434.5 280 71.4
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.4e-119 433.3 280 72.9
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.4e-119 433.3 280 71.4
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.4e-119 433.3 280 72.5
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 3.1e-119 432.2 281 71.2
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 5.3e-119 431.4 279 73.5
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.5e-118 429.9 280 72.9
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 2.6e-118 429.1 280 71.8
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 4.5e-118 428.3 289 69.6
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 5.8e-118 427.9 280 70.7
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 7.6e-118 427.6 280 71.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 9.9e-118 427.2 280 69.6
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.3e-117 426.8 280 72.1
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 6.4e-117 424.5 283 70.3
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 6.4e-117 424.5 283 70.3
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 3.2e-116 422.2 280 72.5
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 7.9e-115 417.5 280 72.1
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.3e-114 416.8 269 69.9
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.1e-113 413.7 238 82.4
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.5e-113 413.3 280 70.4
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 3.3e-113 412.1 279 70.3
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 3.3e-113 412.1 278 69.1
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 4.3e-113 411.8 280 70.7
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 7.4e-113 411.0 284 66.9
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 7.4e-113 411.0 284 66.9
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 2.1e-112 409.5 278 69.4
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 8.1e-112 407.5 275 69.1
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.1e-111 407.1 290 65.9
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.4e-110 402.1 280 68.6
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.4e-110 402.1 316 61.7
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 3.8e-109 398.7 278 69.1
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.9e-109 398.3 392 52.6
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.4e-108 396.7 278 66.2
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.4e-108 396.7 286 66.8
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.5e-108 396.0 305 62.3
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 2.1e-107 392.9 238 77.7
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 7.9e-107 391.0 354 55.1
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.3e-106 390.2 385 52.7
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 2.3e-106 389.4 262 68.3
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.8e-104 382.5 283 63.6
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.8e-103 379.8 236 76.7
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 7.9e-99 364.4 280 63.9
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.3e-98 363.6 283 60.8
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.3e-98 362.8 282 64.5
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 5.1e-98 361.7 281 64.1
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 6.7e-98 361.3 308 56.5
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 1.9e-97 359.8 289 61.9
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.3e-97 358.6 282 63.5
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 2.2e-96 356.3 322 55.3
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 1.8e-95 353.2 270 63.3
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 6.9e-95 351.3 237 68.4
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 2.1e-91 339.7 258 60.9
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 2.0e-89 333.2 207 75.8
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 8.5e-85 317.8 186 79.6
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 2.2e-80 303.1 188 73.9
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.1e-79 300.8 276 54.3
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 3.5e-78 295.8 228 61.4
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 1.0e-77 294.3 187 72.7
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 5.0e-77 292.0 325 50.2
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.6e-75 287.0 304 48.7
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 5.2e-74 282.0 268 52.2
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.7e-72 276.9 187 67.9
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 7.5e-65 251.5 253 46.6
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.4e-63 247.3 144 77.8
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 9.1e-63 244.6 259 46.7
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.8e-58 230.3 194 60.3
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 5.2e-58 228.8 255 42.0
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 8.3e-56 221.5 200 55.5
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 2.4e-39 166.8 114 68.4
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 2.4e-39 166.8 114 68.4
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 7.3e-36 155.2 98 73.5
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.0e-33 147.1 89 75.3
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 4.9e-32 142.5 95 71.6
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 5.4e-31 139.0 93 69.9
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 2.7e-30 136.7 95 70.5
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 7.8e-30 135.2 97 66.0
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 5.1e-29 132.5 84 73.8
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.5e-28 131.0 94 64.9
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.1e-27 127.1 92 64.1
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.9e-23 114.0 75 68.0
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 5.4e-23 112.5 89 60.7
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 9.2e-23 111.7 94 60.6
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 4.6e-22 109.4 66 75.8
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 1.3e-21 107.8 59 81.4
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 3.0e-21 106.7 112 47.3
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.5e-20 104.4 51 88.2
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 1.1e-18 98.2 100 49.0
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 8.9e-18 95.1 55 70.9
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.7e-13 80.9 57 64.9
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.5e-12 77.8 38 84.2
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.5e-12 77.8 46 73.9
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 6.2e-11 72.4 65 56.9
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 8.1e-11 72.0 35 77.1
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 3.1e-10 70.1 55 58.2
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 3.2e-07 60.1 33 69.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 3.2e-07 60.1 33 69.7
Haze_05939 Corylus avellana HOM05D005284 ORTHO05D006609 3.2e-07 60.1 42 64.3


User provided reference genes

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