Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.55 Carica papaya HOM05D000001 ORTHO05D009286 1.5e-74 282.7 136 100.0
THA.LOC104821713 Tarenaya hassleriana HOM05D000001 ORTHO05D009286 1.3e-41 173.3 131 64.9
AT3G05345 Arabidopsis thaliana HOM05D000001 ORTHO05D009286 2.6e-39 165.6 105 73.3
TWI12G0446 Tripterygium wilfordii HOM05D000001 ORTHO05D009286 1.3e-38 163.3 140 64.3
Sp3g04210 Schrenkiella parvula HOM05D000001 ORTHO05D009286 1.9e-37 159.5 105 72.4
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 2.4e-37 159.1 107 72.0
Carub.0003s0462 Capsella rubella HOM05D000001 ORTHO05D009286 2.4e-37 159.1 105 72.4
Gohir.D11G275300 Gossypium hirsutum HOM05D000001 ORTHO05D009286 3.2e-37 158.7 137 63.5
Gorai.007G297100 Gossypium raimondii HOM05D000001 ORTHO05D009286 3.2e-37 158.7 137 63.5
Ciclev10002196m.g Citrus clementina HOM05D000001 ORTHO05D009286 7.1e-37 157.5 136 63.2
Manes.09G167201 Manihot esculenta HOM05D000001 ORTHO05D009286 7.1e-37 157.5 135 62.2
GSVIVG01000053001 Vitis vinifera HOM05D000001 ORTHO05D009286 7.1e-37 157.5 140 60.7
Gohir.A11G265100 Gossypium hirsutum HOM05D000001 ORTHO05D009286 1.6e-36 156.4 136 63.2
CARHR079690 Cardamine hirsuta HOM05D000001 ORTHO05D009286 3.5e-36 155.2 105 70.5
A05p32000 Brassica napus HOM05D000001 ORTHO05D009286 4.6e-36 154.8 106 71.7
BraA05t22031Z Brassica rapa HOM05D000001 ORTHO05D009286 4.6e-36 154.8 106 71.7
Thecc.05G303100 Theobroma cacao HOM05D000001 ORTHO05D009286 4.6e-36 154.8 136 58.8
CiPaw.07G017900 Carya illinoinensis HOM05D000001 ORTHO05D009286 6.0e-36 154.5 137 62.0
BNapus_Darmor_BZH_scaffold_114p00160 Brassica napus HOM05D000001 ORTHO05D009286 1.0e-35 153.7 106 69.8
BraSC132t45509Z Brassica rapa HOM05D000001 ORTHO05D009286 3.0e-35 152.1 107 70.1
Duzib177G1137 Durio zibethinus HOM05D000001 ORTHO05D009582 3.0e-35 152.1 121 66.1
Atru.chr2.405 Acer truncatum HOM05D000001 ORTHO05D009286 9.6e-34 147.1 137 62.0
Potri.013G021000 Populus trichocarpa HOM05D000001 ORTHO05D009286 4.8e-33 144.8 135 55.6
Sabra13G0023400 Salix brachista HOM05D000001 ORTHO05D009286 6.2e-33 144.4 135 54.8
QL03p007002 Quercus lobata HOM05D000001 ORTHO05D009286 2.4e-32 142.5 119 63.9
Prupe.6G325800 Prunus persica HOM05D000001 ORTHO05D009286 1.5e-31 139.8 99 71.7
Dinv40288 Davidia involucrata HOM05D000001 ORTHO05D009286 4.5e-31 138.3 143 51.7
PGR083G0578 Punica granatum HOM05D000001 ORTHO05D009286 4.5e-31 138.3 128 60.2
Eucgr.B01968 Eucalyptus grandis HOM05D000001 ORTHO05D009286 1.0e-30 137.1 131 60.3
Hund07071 Selenicereus undatus HOM05D000001 ORTHO05D009286 2.2e-30 136.0 101 67.3
CsaV3_2G005310 Cucumis sativus L. HOM05D000001 ORTHO05D009286 2.9e-30 135.6 130 57.7
Cfa006590 Carpinus fangiana HOM05D000001 ORTHO05D009582 4.9e-30 134.8 88 76.1
Haze_04195 Corylus avellana HOM05D000001 ORTHO05D009582 6.5e-30 134.4 88 76.1
RcHm_v2.0_Chr3g0454761 Rosa chinensis HOM05D000001 ORTHO05D009286 1.1e-29 133.7 88 77.3
EL10Ac6g14022 Beta vulgaris HOM05D000001 ORTHO05D009286 1.9e-29 132.9 107 62.6
DCAR_024833 Daucus carota HOM05D000001 ORTHO05D009286 1.9e-29 132.9 103 62.1
FAN03G0753 Fragaria x ananassa HOM05D000001 ORTHO05D009286 4.2e-29 131.7 93 72.0
Oeu017485.1 Olea europaea HOM05D000001 ORTHO05D009286 7.1e-29 131.0 112 62.5
Actinidia23635 Actinidia chinensis HOM05D000001 ORTHO05D009286 1.6e-28 129.8 97 63.9
ClCG02G015790 Citrullus lanatus HOM05D000001 ORTHO05D009286 1.6e-28 129.8 130 55.4
MD12G1219200 Malus domestica HOM05D000001 ORTHO05D009286 1.6e-28 129.8 137 56.2
TAR362G0463 Trochodendron aralioides HOM05D000001 ORTHO05D009286 2.1e-28 129.4 139 50.4
MELO3C004256.2 Cucumis melo HOM05D000001 ORTHO05D009286 2.7e-28 129.0 129 55.8
arahy.Tifrunner.gnm1.ann1.N2G7N8 Arachis hypogaea HOM05D000001 ORTHO05D009286 3.5e-28 128.6 94 62.8
Cc02_g33430 Coffea canephora HOM05D000001 ORTHO05D009286 3.5e-28 128.6 118 57.6
FAN06G3148 Fragaria x ananassa HOM05D000001 ORTHO05D009286 3.5e-28 128.6 100 68.0
FvH4_7g03590 Fragaria vesca HOM05D000001 ORTHO05D009286 6.0e-28 127.9 100 68.0
TPR.G33241 Trifolium pratense HOM05D000001 ORTHO05D009286 6.0e-28 127.9 120 55.0
CAN.G1034.26 Capsicum annuum HOM05D000001 ORTHO05D009286 1.0e-27 127.1 141 51.1
Ca_09356_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009286 1.0e-27 127.1 90 64.4
Medtr7g113530 Medicago truncatula HOM05D000001 ORTHO05D009286 1.3e-27 126.7 92 66.3
Nitab4.5_0000137g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009286 1.3e-27 126.7 141 48.9
PGSC0003DMG400024697 Solanum tuberosum HOM05D000001 ORTHO05D009286 1.8e-27 126.3 144 52.1
Nitab4.5_0003156g0050 Nicotiana tabacum HOM05D000001 ORTHO05D009286 2.3e-27 125.9 151 51.0
Peaxi162Scf00037g00631 Petunia axillaris HOM05D000001 ORTHO05D009286 2.3e-27 125.9 97 62.9
Psat3g010960 Pisum sativum HOM05D000001 ORTHO05D009286 2.3e-27 125.9 109 57.8
Sc06g0003290 Simmondsia chinensis HOM05D000001 ORTHO05D009286 3.0e-27 125.6 100 61.0
Lj1g0025628 Lotus japonicus HOM05D000001 ORTHO05D009286 3.9e-27 125.2 93 67.7
RhsimUnG0226000 Rhododendron simsii HOM05D000001 ORTHO05D009286 3.9e-27 125.2 123 52.8
COL.COLO4_13469 Corchorus olitorius HOM05D000001 ORTHO05D009286 5.1e-27 124.8 148 52.7
Phvul.006G091900 Phaseolus vulgaris HOM05D000001 ORTHO05D009286 5.1e-27 124.8 92 63.0
Sed0027835 Sechium edule HOM05D000001 ORTHO05D009286 6.7e-27 124.4 125 54.4
AUR62038496 Chenopodium quinoa HOM05D000001 ORTHO05D009286 1.5e-26 123.2 83 69.9
Sopen01g042810 Solanum pennellii HOM05D000001 ORTHO05D009286 1.9e-26 122.9 148 48.6
CANSAT78G0322 Cannabis sativa HOM05D000001 ORTHO05D009286 2.5e-26 122.5 84 71.4
CANSAT78G1766 Cannabis sativa HOM05D000001 ORTHO05D009286 2.5e-26 122.5 84 71.4
AUR62014152 Chenopodium quinoa HOM05D000001 ORTHO05D009286 3.3e-26 122.1 83 69.9
Glyma.03G237900 Glycine max HOM05D000001 ORTHO05D009286 4.3e-26 121.7 93 62.4
CSS0009057 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009286 5.7e-26 121.3 98 61.2
Nn1g02236 Nelumbo nucifera HOM05D000001 ORTHO05D009286 5.7e-26 121.3 147 46.9
Lalb_Chr18g0045641 Lupinus albus HOM05D000001 ORTHO05D009286 9.7e-26 120.6 133 47.4
Solyc01g099260.3 Solanum lycopersicum HOM05D000001 ORTHO05D009286 9.7e-26 120.6 120 55.0
VMungo0540G1561 Vigna mungo HOM05D000001 ORTHO05D009286 6.3e-25 117.9 131 48.1
Aa31LG5G15650 Aethionema arabicum HOM05D000001 ORTHO05D009286 6.9e-24 114.4 84 66.7
arahy.Tifrunner.gnm1.ann1.LJ09F6 Arachis hypogaea HOM05D000001 ORTHO05D009286 6.9e-24 114.4 150 44.0
Aqoxy2G03342 Aquilegia oxysepala HOM05D000001 ORTHO05D009286 9.0e-24 114.0 98 57.1
Migut.B01034 Erythranthe guttata HOM05D000001 ORTHO05D009286 1.2e-23 113.6 82 67.1
MSTRG.16965 Avicennia marina HOM05D000001 ORTHO05D009286 2.0e-23 112.8 83 62.7
unitig_747.g21349 Utricularia gibba HOM05D000001 ORTHO05D009286 2.0e-23 112.8 83 65.1
vmacro05020 Vaccinium macrocarpon HOM05D000001 ORTHO05D009286 1.0e-22 110.5 144 45.8
ECA240G0839 Erigeron canadensis HOM05D000001 ORTHO05D009286 3.8e-22 108.6 85 61.2
HanXRQChr03g0071681 Helianthus annuus HOM05D000001 ORTHO05D009286 1.9e-21 106.3 87 59.8
PSO302G0274 Papaver somniferum HOM05D000001 ORTHO05D009286 9.4e-21 104.0 132 44.7
MBI17_g31750_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009286 1.4e-19 100.1 93 51.6
CDE05G2030 Ceratophyllum demersum HOM05D000001 ORTHO05D009286 6.7e-19 97.8 136 39.0
PSO170G4485 Papaver somniferum HOM05D000001 ORTHO05D009286 1.5e-18 96.7 100 53.0
AL3G15790 Arabidopsis lyrata HOM05D000001 ORTHO05D009286 9.7e-18 94.0 52 80.8
SalBow8G4411 Salvia bowleyana HOM05D000001 ORTHO05D009286 9.7e-18 94.0 125 42.4
SGA_v2.0_scaffold172G38993 Striga asiatica HOM05D000001 ORTHO05D009286 1.7e-17 93.2 85 55.3
Mapoly0074s0078 Marchantia polymorpha HOM05D000001 ORTHO05D009286 2.6e-15 85.9 77 45.5
HPP92_013683 Vanilla planifolia HOM05D000001 ORTHO05D009286 7.7e-15 84.3 79 54.4
Pp3c27_1510 Physcomitrium patens HOM05D000001 ORTHO05D009286 2.9e-14 82.4 76 44.7
Zm00001eb287490 Zea mays HOM05D000001 ORTHO05D009286 5.0e-14 81.6 79 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2674 Anthoceros agrestis HOM05D000001 ORTHO05D009286 6.1e-12 74.7 77 42.9
SMO367G0812 Selaginella moellendorffii HOM05D000001 ORTHO05D009286 1.3e-09 67.0 84 44.0
CBR_g31147 Chara braunii HOM05D000001 ORTHO05D009286 4.1e-08 62.0 104 36.5
Os05g0397800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D009286 5.3e-08 61.6 67 49.3
Eucgr.J03121 Eucalyptus grandis HOM05D003458 ORTHO05D003854 1.0e-06 57.4 76 38.2
HanXRQChr02g0034051 Helianthus annuus HOM05D003458 ORTHO05D003854 1.0e-06 57.4 94 38.3
Lsat_1_v5_gn_1_30900 Lactuca sativa HOM05D003458 ORTHO05D003854 1.0e-06 57.4 95 33.7
Lsat_1_v5_gn_9_123500 Lactuca sativa HOM05D000001 ORTHO05D009286 1.0e-06 57.4 63 50.8
Haze_16677 Corylus avellana HOM05D003458 ORTHO05D003854 2.2e-06 56.2 71 38.0
Rhsim12G0184600 Rhododendron simsii HOM05D003458 ORTHO05D003854 2.2e-06 56.2 78 38.5
Rhsim12G0186500 Rhododendron simsii HOM05D003458 ORTHO05D003854 2.2e-06 56.2 78 38.5
Cc04_g04480 Coffea canephora HOM05D000367 ORTHO05D001438 2.9e-06 55.8 112 34.8
Os01g0606900 Oryza sativa ssp. japonica HOM05D000175 ORTHO05D001341 3.8e-06 55.5 92 34.8
GSVIVG01032045001 Vitis vinifera HOM05D000367 ORTHO05D002159 3.8e-06 55.5 130 26.2
AUR62029843 Chenopodium quinoa HOM05D003458 ORTHO05D003854 5.0e-06 55.1 75 37.3
Dinv21418 Davidia involucrata HOM05D003458 ORTHO05D003854 6.5e-06 54.7 74 39.2
Cre05.g232000 Chlamydomonas reinhardtii HOM05D000367 ORTHO05D002467 8.5e-06 54.3 68 41.2
TWI39G0419 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 8.5e-06 54.3 52 44.2
TWI75G0679 Tripterygium wilfordii HOM05D000367 ORTHO05D001438 8.5e-06 54.3 88 37.5
vmacro16846 Vaccinium macrocarpon HOM05D003458 ORTHO05D003854 8.5e-06 54.3 60 45.0
vmacro16847 Vaccinium macrocarpon HOM05D003458 ORTHO05D003854 8.5e-06 54.3 60 45.0
Zm00001eb161610 Zea mays HOM05D000175 ORTHO05D001341 8.5e-06 54.3 80 33.8


User provided reference genes

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