Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.2e-215 753.1 431 100.0
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.6e-103 380.6 303 81.5
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.6e-103 380.6 302 80.1
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 2.1e-103 380.2 302 82.1
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 4.0e-102 375.9 310 77.4
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.9e-99 367.1 307 80.5
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 4.2e-99 365.9 306 79.4
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 5.5e-99 365.5 299 81.6
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.2e-98 364.4 299 68.6
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.6e-98 364.0 306 69.0
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.6e-98 364.0 317 73.2
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.3e-97 360.9 306 73.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.8e-97 360.5 305 75.4
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.8e-97 360.5 307 75.6
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.3e-97 360.1 310 73.9
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 6.7e-97 358.6 306 76.5
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 6.7e-97 358.6 306 73.9
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 8.7e-97 358.2 301 79.4
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.9e-96 357.1 303 77.6
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 3.3e-96 356.3 311 69.8
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 7.4e-96 355.1 306 75.2
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 7.4e-96 355.1 299 75.6
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.3e-95 354.4 305 74.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.6e-95 354.0 305 70.8
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 2.8e-95 353.2 305 74.1
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.4e-94 350.9 301 75.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 3.1e-94 349.7 303 68.3
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 4.0e-94 349.4 276 80.1
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.6e-93 346.7 319 74.3
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 4.5e-93 345.9 303 73.3
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.7e-92 344.0 306 76.8
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.9e-92 343.2 277 84.5
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 6.5e-92 342.0 315 65.7
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.5e-91 340.1 342 72.5
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 7.1e-91 338.6 315 67.0
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 7.1e-91 338.6 313 65.2
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 9.3e-91 338.2 304 65.8
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.6e-90 337.4 303 69.6
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 6.1e-90 335.5 300 68.7
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.8e-89 334.0 313 70.9
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.8e-89 334.0 314 63.1
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.0e-89 333.2 306 72.2
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 6.7e-89 332.0 299 67.9
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 8.7e-89 331.6 309 65.7
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 2.5e-88 330.1 300 63.3
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 9.7e-88 328.2 299 61.9
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 9.7e-88 328.2 303 63.7
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.8e-87 326.6 306 66.7
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 6.3e-87 325.5 301 74.8
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 6.3e-87 325.5 250 83.2
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.8e-86 323.9 303 71.0
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.4e-86 323.6 299 67.9
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 9.0e-86 321.6 303 60.1
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 4.5e-85 319.3 318 72.0
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 4.5e-85 319.3 314 66.2
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.0e-84 318.2 271 64.9
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 2.1e-82 310.5 304 71.7
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 7.9e-82 308.5 305 70.8
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 6.7e-81 305.4 333 67.3
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 5.7e-80 302.4 303 56.8
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 3.7e-79 299.7 303 56.1
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 4.8e-79 299.3 165 89.7
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 8.2e-79 298.5 191 81.7
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 9.1e-78 295.0 304 69.1
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 3.8e-76 289.7 285 59.6
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 6.5e-76 288.9 339 60.8
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.1e-75 288.1 300 70.3
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.1e-75 288.1 300 60.7
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 1.9e-75 287.3 303 53.5
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 5.5e-75 285.8 302 70.2
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 5.5e-75 285.8 342 62.3
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 7.2e-75 285.4 308 64.9
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 4.7e-74 282.7 302 58.6
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 4.7e-74 282.7 300 66.7
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 3.9e-73 279.6 311 64.3
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.9e-73 279.6 307 63.5
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.2e-71 273.9 290 62.4
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.2e-69 268.1 295 60.0
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 3.5e-69 266.5 299 64.5
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 2.2e-68 263.8 284 68.3
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.1e-67 261.5 305 61.6
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.5e-67 261.2 294 64.6
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.5e-67 260.4 276 67.4
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 8.0e-66 255.4 189 69.3
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.8e-65 254.2 306 60.1
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 3.0e-65 253.4 304 66.8
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 7.4e-64 248.8 333 49.8
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.3e-63 248.1 302 62.9
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.3e-63 248.1 302 62.9
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 3.7e-63 246.5 301 53.2
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 1.1e-62 245.0 364 58.2
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 1.1e-62 245.0 312 59.6
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.4e-62 244.6 309 63.8
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.8e-62 244.2 314 59.2
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.4e-62 243.8 304 51.3
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.4e-62 243.8 304 51.3
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 5.3e-62 242.7 303 64.7
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.9e-60 236.9 305 52.5
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.9e-60 236.9 305 52.5
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 2.9e-60 236.9 306 57.5
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.5e-60 235.7 306 50.0
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 8.5e-60 235.3 304 52.6
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 7.2e-59 232.3 305 58.7
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.2e-58 231.5 305 62.6
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.7e-55 221.1 275 65.5
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 5.4e-54 216.1 306 57.2
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.4e-54 216.1 189 64.0
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 9.1e-54 215.3 306 52.9
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 5.9e-53 212.6 163 66.9
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 6.5e-52 209.1 303 58.7
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.0e-44 185.3 137 70.1
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 8.6e-44 182.2 116 75.9
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 7.2e-43 179.1 128 68.8
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.0e-41 173.3 158 61.4
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.0e-38 162.5 186 51.6
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 8.0e-34 149.1 239 45.2
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.8e-33 147.9 102 72.5
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.4e-30 137.5 164 72.6
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.8e-26 124.0 66 92.4
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 1.8e-25 121.3 131 52.7
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 7.1e-22 109.4 97 62.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 7.1e-22 109.4 97 62.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.6e-21 108.2 95 63.2
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 2.9e-15 87.4 132 56.8
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.4e-14 84.3 48 77.1
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 5.4e-14 83.2 53 81.1
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 2.7e-13 80.9 51 76.5
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 7.8e-13 79.3 59 76.3
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.3e-12 78.6 51 74.5
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 7.3e-11 72.8 68 64.7
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 5.8e-08 63.2 101 40.6
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.9e-07 60.8 29 89.7
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 6.4e-07 59.7 124 35.5
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.4e-07 59.7 105 38.1
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.9e-06 58.2 61 59.0
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.4e-06 57.8 116 36.2
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 3.2e-06 57.4 105 37.1
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.2e-06 57.4 59 50.8
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 7.1e-06 56.2 109 35.8
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 9.3e-06 55.8 53 47.2
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 9.3e-06 55.8 117 33.3
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 9.3e-06 55.8 64 42.2
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 9.3e-06 55.8 76 43.4
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 9.3e-06 55.8 95 35.8


User provided reference genes

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