Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 4.2e-34 147.5 77 100.0
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 2.3e-32 141.7 76 93.4
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 6.7e-32 140.2 76 92.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 8.7e-32 139.8 76 90.8
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 5.6e-31 137.1 76 90.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.3e-30 136.0 76 90.8
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.3e-30 136.0 76 90.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-30 135.2 76 89.5
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-30 135.2 76 89.5
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.1e-30 135.2 76 89.5
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.8e-30 134.0 76 89.5
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 6.2e-30 133.7 76 85.5
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.1e-29 132.9 76 90.8
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.8e-29 132.1 77 89.6
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.8e-29 132.1 76 89.5
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.4e-29 131.7 76 89.5
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.4e-29 131.7 76 89.5
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 3.1e-29 131.3 76 88.2
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 5.3e-29 130.6 76 89.5
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 6.9e-29 130.2 76 84.2
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 9.0e-29 129.8 76 88.2
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 9.0e-29 129.8 78 87.2
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 9.0e-29 129.8 76 88.2
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.2e-28 129.4 76 86.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.2e-28 129.4 76 86.8
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.2e-28 129.4 76 88.2
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.5e-28 129.0 76 86.8
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 2.0e-28 128.6 76 85.5
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.4e-28 127.9 76 85.5
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.4e-28 127.9 76 85.5
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 3.4e-28 127.9 76 85.5
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.5e-28 127.5 76 86.8
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 5.8e-28 127.1 72 90.3
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 5.8e-28 127.1 78 84.6
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 5.8e-28 127.1 78 84.6
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 7.6e-28 126.7 78 84.6
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.7e-27 125.6 76 85.5
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.2e-27 125.2 76 82.9
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 2.2e-27 125.2 76 86.8
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 2.2e-27 125.2 76 85.5
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.2e-27 125.2 77 84.4
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.9e-27 124.8 76 77.6
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 4.9e-27 124.0 76 84.2
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 4.9e-27 124.0 77 83.1
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 6.5e-27 123.6 76 80.3
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 6.5e-27 123.6 76 82.9
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 6.5e-27 123.6 76 81.6
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 6.5e-27 123.6 76 81.6
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.4e-26 122.5 78 78.2
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.5e-26 121.7 77 77.9
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.5e-26 121.7 80 78.8
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.5e-26 121.7 76 82.9
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 3.2e-26 121.3 76 81.6
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 4.2e-26 120.9 76 82.9
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 4.2e-26 120.9 80 78.8
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 4.2e-26 120.9 76 81.6
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 5.5e-26 120.6 77 76.6
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 5.5e-26 120.6 76 80.3
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 7.1e-26 120.2 76 84.2
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 7.1e-26 120.2 76 80.3
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.2e-25 119.4 78 79.5
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.2e-25 119.4 76 82.9
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.7e-25 118.2 79 78.5
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 2.7e-25 118.2 79 78.5
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 3.5e-25 117.9 78 79.5
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 3.5e-25 117.9 79 78.5
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 3.5e-25 117.9 79 78.5
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.5e-25 117.9 79 78.5
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.5e-25 117.9 79 78.5
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 3.5e-25 117.9 76 78.9
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 6.0e-25 117.1 76 80.3
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 6.0e-25 117.1 78 78.2
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 7.9e-25 116.7 76 78.9
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.0e-24 116.3 77 79.2
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.8e-24 115.5 76 76.3
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 3.0e-24 114.8 78 76.9
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 3.0e-24 114.8 78 76.9
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 3.9e-24 114.4 79 74.7
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 3.9e-24 114.4 79 74.7
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 3.9e-24 114.4 69 87.0
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 5.1e-24 114.0 76 76.3
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 5.1e-24 114.0 76 78.9
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 5.1e-24 114.0 76 76.3
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 5.1e-24 114.0 76 76.3
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 8.7e-24 113.2 82 73.2
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 8.7e-24 113.2 76 73.7
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.1e-23 112.8 78 76.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.1e-23 112.8 76 77.6
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.1e-23 112.8 83 73.5
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 4.3e-23 110.9 76 69.7
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 5.7e-23 110.5 79 70.9
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 7.4e-23 110.2 64 84.4
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.6e-22 109.0 79 72.2
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.6e-22 109.0 82 70.7
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 3.7e-22 107.8 84 70.2
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 6.3e-22 107.1 80 72.5
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.1e-21 106.3 80 67.5
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.1e-21 106.3 65 80.0
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.4e-21 105.9 75 76.0
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 3.1e-21 104.8 84 70.2
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 9.0e-21 103.2 76 68.4
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.5e-20 102.4 76 68.4
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.0e-20 102.1 65 72.3
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 2.9e-19 98.2 85 64.7
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.8e-19 97.8 151 45.0
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 4.2e-18 94.4 74 73.0
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.8e-16 89.0 105 50.5
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.8e-16 89.0 76 64.5
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.8e-16 89.0 66 69.7
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 3.0e-16 88.2 48 85.4
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.9e-16 87.8 53 77.4
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 3.9e-16 87.8 81 67.9
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.1e-16 87.4 51 80.4
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 5.1e-16 87.4 76 61.8
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.9e-15 85.5 58 70.7
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 4.3e-15 84.3 52 84.6
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 7.4e-15 83.6 104 49.0
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.3e-14 82.8 78 62.8
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.6e-14 82.4 80 65.0
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 4.8e-14 80.9 44 93.2
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 6.3e-14 80.5 44 88.6
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 8.2e-14 80.1 48 79.2
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.1e-13 79.7 48 77.1
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.2e-12 76.3 44 81.8
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-12 75.5 44 84.1
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.0e-11 73.2 71 59.2
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.7e-11 72.4 44 79.5
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.9e-11 71.6 44 77.3
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.9e-11 71.6 55 70.9
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.4e-10 69.3 45 77.8
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 4.6e-09 64.3 74 52.7
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 2.0e-07 58.9 34 85.3
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.3e-06 56.2 37 78.4
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.7e-06 54.7 78 44.9


User provided reference genes

Program Settings