Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 0.0e+00 1774.6 954 100.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.2e-162 578.2 1042 40.2
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 1.6e-159 567.8 1020 42.1
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 3.8e-156 556.6 1085 37.4
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 1.2e-149 535.0 1023 41.7
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 7.6e-149 532.3 1006 38.5
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 7.6e-149 532.3 1013 38.5
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 7.8e-146 522.3 1055 37.6
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.0e-145 521.9 1023 38.3
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.5e-144 517.3 1091 37.2
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 3.3e-144 516.9 1051 38.2
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 4.0e-142 510.0 1102 35.0
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 8.4e-140 502.3 1054 38.7
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 1.5e-133 481.5 1074 35.8
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 7.6e-133 479.2 1073 36.0
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.9e-132 477.2 1017 37.5
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 2.4e-126 457.6 1077 34.4
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 1.0e-124 452.2 567 47.6
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.9e-122 442.6 1044 37.5
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.2e-119 434.5 1053 33.4
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 3.7e-119 433.7 1031 36.0
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 2.2e-116 424.5 1044 37.0
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 2.5e-115 421.0 548 46.7
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 1.0e-113 415.6 1029 34.3
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 5.1e-113 413.3 1007 33.8
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 1.4e-110 405.2 1088 35.7
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 8.5e-108 396.0 1049 35.1
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 5.3e-102 376.7 1021 35.7
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 1.2e-101 375.6 1045 35.0
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 2.6e-101 374.4 566 42.4
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 8.5e-100 369.4 1047 32.2
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 8.5e-100 369.4 1062 32.7
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 2.5e-99 367.9 730 35.8
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 9.4e-99 365.9 1032 31.3
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 8.0e-98 362.8 1058 31.2
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 1.4e-97 362.1 1062 30.7
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 2.0e-96 358.2 1049 32.0
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.3e-95 355.5 1046 30.6
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.3e-95 355.5 1030 30.8
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.2e-95 354.8 1034 31.2
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.8e-95 353.6 1061 30.1
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 2.2e-92 344.7 1024 31.2
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 5.5e-91 340.1 1028 30.2
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 5.5e-91 340.1 1184 29.7
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.0e-89 335.9 1104 29.3
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 4.5e-85 320.5 1014 31.0
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 7.7e-85 319.7 1024 31.0
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.7e-84 318.5 1009 30.3
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.7e-84 318.5 1066 29.5
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 2.2e-84 318.2 1068 29.1
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 2.9e-84 317.8 934 29.9
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 5.0e-84 317.0 1095 29.9
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 6.5e-84 316.6 758 33.6
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 6.5e-84 316.6 1093 28.5
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 5.5e-83 313.5 1041 31.4
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 7.2e-83 313.2 1014 30.3
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 7.2e-83 313.2 1023 29.7
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 7.2e-83 313.2 1033 30.2
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 9.4e-83 312.8 1001 32.1
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 3.6e-82 310.8 1007 29.6
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 6.1e-82 310.1 1024 30.4
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 3.0e-81 307.8 641 35.7
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 6.8e-81 306.6 1094 27.8
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.2e-80 305.8 735 31.6
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.5e-80 305.4 1136 28.3
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 4.4e-80 303.9 745 31.8
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 4.4e-80 303.9 1142 28.5
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 7.5e-80 303.1 1024 32.6
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 7.5e-80 303.1 1140 28.8
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 1.3e-79 302.4 1003 29.2
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.7e-79 302.0 1019 29.9
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.2e-79 301.6 1129 29.8
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 1.1e-78 299.3 1032 29.8
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 2.7e-77 294.7 896 31.9
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 7.7e-77 293.1 1006 28.0
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 1.0e-76 292.7 945 29.6
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.3e-76 292.4 977 28.6
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 6.6e-76 290.0 681 34.2
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.5e-75 288.9 1029 29.3
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 1.6e-74 285.4 998 29.1
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.8e-74 284.6 511 38.4
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 4.7e-74 283.9 1067 27.8
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 2.6e-72 278.1 745 33.0
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 3.4e-72 277.7 585 34.2
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 3.4e-72 277.7 1004 29.2
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 1.0e-68 266.2 720 31.0
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 2.3e-68 265.0 928 29.1
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.5e-67 262.3 617 32.6
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 1.5e-67 262.3 734 33.7
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 2.3e-65 255.0 573 33.9
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 4.0e-65 254.2 557 33.4
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 1.7e-63 248.8 728 31.7
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 8.3e-63 246.5 571 34.7
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 4.6e-61 240.7 505 34.1
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 1.7e-60 238.8 171 64.3
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 8.9e-57 226.5 724 30.1
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 1.4e-54 219.2 395 36.2
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.9e-54 218.8 400 36.2
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.2e-50 206.1 794 28.3
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 8.1e-50 203.4 367 37.1
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.9e-47 194.9 356 36.2
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 1.7e-44 185.7 177 51.4
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 7.6e-40 170.2 300 40.7
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 9.9e-40 169.9 299 40.8
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 5.3e-33 147.5 201 39.8
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 3.4e-32 144.8 232 38.4
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.2e-31 142.1 218 38.1
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 6.0e-29 134.0 343 30.3
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 3.0e-28 131.7 265 33.2
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.8e-23 114.8 265 32.5
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 6.4e-23 114.0 228 30.3
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.1e-21 109.0 319 29.2
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 2.7e-21 108.6 138 45.7
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.6e-18 99.4 78 61.5
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 5.3e-17 94.4 241 30.7
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 9.0e-17 93.6 123 44.7
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.8e-10 72.0 106 38.7
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.6e-08 65.5 685 24.7
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 8.4e-07 60.5 204 33.3
CDE05G3494 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.5e-06 58.9 131 34.4


User provided reference genes

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