Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.8e-99 365.9 182 100.0
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.6e-95 352.1 182 95.1
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 1.3e-94 349.7 182 95.1
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.3e-94 349.7 182 95.1
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.2e-94 349.0 182 94.5
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 2.9e-94 348.6 182 94.5
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 2.9e-94 348.6 182 95.1
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 94.5
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 94.0
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 94.0
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 3.8e-94 348.2 182 94.5
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.4e-93 346.3 182 94.0
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.4e-93 346.3 182 94.0
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.4e-93 346.3 182 93.4
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 1.9e-93 345.9 182 93.4
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 93.4
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.5e-93 345.5 177 95.5
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 3.2e-93 345.1 182 93.4
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 7.2e-93 344.0 179 95.0
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 92.3
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.3
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 93.4
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 94.0
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 94.0
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.2e-92 343.2 180 92.8
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.3
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 91.8
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 2.1e-92 342.4 182 92.9
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 2.1e-92 342.4 182 92.3
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.8
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.2
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.8
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.2
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 4.7e-92 341.3 180 92.8
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 92.3
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 6.1e-92 340.9 178 93.8
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 7.9e-92 340.5 182 92.3
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 91.2
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 91.8
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 91.8
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 91.8
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.8e-91 339.3 181 92.3
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 90.7
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 3.0e-91 338.6 178 93.3
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 91.2
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 90.7
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 90.7
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 90.1
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 89.0
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 89.6
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 88.5
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 90.7
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 91.8
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 3.3e-90 335.1 181 89.0
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 9.7e-90 333.6 176 92.6
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 89.0
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 2.2e-89 332.4 176 92.6
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 88.5
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 3.7e-89 331.6 172 94.2
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 3.7e-89 331.6 173 93.6
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 3.7e-89 331.6 176 93.8
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 4.8e-89 331.3 178 91.0
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 6.3e-89 330.9 179 89.4
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 6.3e-89 330.9 176 92.0
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 3.1e-88 328.6 179 89.4
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 3.1e-88 328.6 182 87.9
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 5.3e-88 327.8 202 82.2
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 7.0e-88 327.4 173 93.1
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 7.0e-88 327.4 197 84.3
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.6e-87 326.2 194 84.5
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.6e-87 326.2 182 89.6
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.6e-87 326.2 182 87.9
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.6e-87 325.5 172 94.2
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.7e-86 322.8 182 87.9
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 2.2e-86 322.4 176 88.1
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 2.9e-86 322.0 182 87.4
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 86.8
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 6.5e-86 320.9 182 86.3
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 6.5e-86 320.9 182 86.8
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 6.5e-86 320.9 182 85.2
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 87.4
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.5e-85 319.7 178 89.3
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 2.5e-85 318.9 182 85.7
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 4.2e-85 318.2 178 90.4
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 87.4
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 2.3e-83 312.4 177 87.0
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 2.3e-83 312.4 208 77.9
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 3.3e-82 308.5 174 86.8
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 4.4e-82 308.1 173 87.3
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.2e-81 305.8 182 86.3
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 3.7e-81 305.1 174 86.2
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 3.7e-81 305.1 174 86.2
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 6.3e-81 304.3 174 85.6
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.4e-80 303.1 174 85.1
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 6.5e-78 294.3 182 81.3
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.2e-77 292.0 157 93.6
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 3.6e-76 288.5 155 91.6
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 3.6e-76 288.5 153 88.9
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 6.1e-76 287.7 183 80.9
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.3e-75 285.8 182 78.0
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 6.8e-75 284.3 177 80.8
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 3.4e-74 282.0 151 92.7
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 5.7e-74 281.2 155 88.4
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.4e-72 276.6 149 87.9
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 8.5e-70 267.3 155 85.2
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 8.0e-68 260.8 181 75.7
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 5.7e-66 254.6 184 75.5
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 2.2e-65 252.7 139 87.1
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 3.1e-64 248.8 130 92.3
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 9.2e-64 247.3 128 91.4
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 9.5e-61 237.3 126 88.9
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.4e-59 233.4 184 62.0
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 5.4e-56 221.5 177 58.8
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.6e-55 219.9 181 66.9
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 1.3e-54 216.9 185 58.9
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.8e-51 206.5 105 94.3
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 5.8e-50 201.4 105 91.4
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 2.2e-49 199.5 105 91.4
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.7e-49 198.7 105 91.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.5e-47 192.2 101 90.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 2.5e-45 186.0 179 60.9
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 5.2e-43 178.3 100 87.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.6e-42 176.0 154 63.6
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.7e-41 172.2 92 91.3
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 1.9e-40 169.9 92 90.2
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.2e-40 169.1 86 93.0
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.5e-37 160.2 91 80.2
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 4.4e-34 148.7 127 59.8
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 9.2e-32 141.0 87 79.3
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.1e-31 139.8 92 78.3
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.2e-28 130.6 66 92.4
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 7.6e-26 121.3 77 80.5
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-24 117.5 70 85.7
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.7e-17 93.6 48 87.5
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.3e-13 79.0 182 29.1
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.6e-13 78.6 181 30.4
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.1e-12 76.6 58 63.8
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 2.1e-12 76.6 49 75.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 2.8e-12 76.3 182 30.8
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 3.6e-12 75.9 182 27.5
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 8.1e-12 74.7 182 28.0
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.1e-11 74.3 182 29.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.4e-11 73.9 182 29.7
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.4e-11 73.2 182 29.1
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 3.1e-11 72.8 182 29.1
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 3.1e-11 72.8 182 29.1
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 3.1e-11 72.8 182 29.1
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.1e-11 72.8 182 28.6
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 4.0e-11 72.4 182 28.0
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 5.3e-11 72.0 182 28.6
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 5.3e-11 72.0 182 28.6
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 6.9e-11 71.6 182 29.1
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.2e-10 70.9 182 28.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.2e-10 70.9 181 28.2
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.5e-10 70.5 182 28.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.6e-10 69.7 180 31.7
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.3e-09 67.4 182 28.0
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.7e-09 67.0 182 26.9
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 2.2e-09 66.6 182 25.8
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.2e-08 62.4 198 24.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 9.3e-08 61.2 137 29.9


User provided reference genes

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