Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 8.0e-157 557.0 270 100.0
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 8.9e-124 447.2 307 73.0
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 1.3e-122 443.4 305 72.8
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 4.9e-122 441.4 307 71.7
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 8.4e-122 440.7 297 71.4
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 9.3e-121 437.2 307 71.7
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 9.3e-121 437.2 307 71.7
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 9.3e-121 437.2 303 71.0
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 9.3e-121 437.2 303 71.9
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.6e-120 436.4 307 71.0
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.1e-120 436.0 309 69.3
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.7e-119 433.0 303 71.0
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 3.0e-119 432.2 303 69.6
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 5.1e-119 431.4 302 69.9
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 8.7e-119 430.6 305 69.8
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 1.5e-118 429.9 305 69.5
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 1.5e-118 429.9 307 69.7
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 1.9e-118 429.5 309 68.3
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 2.5e-118 429.1 303 69.6
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.5e-118 429.1 307 69.1
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 4.3e-118 428.3 308 68.5
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 5.6e-118 427.9 307 68.4
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 7.3e-118 427.6 307 68.1
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 9.6e-118 427.2 308 68.2
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 9.6e-118 427.2 307 69.4
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 1.6e-117 426.4 307 68.4
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.1e-117 426.0 307 69.4
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 2.8e-117 425.6 309 67.3
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.8e-117 425.6 308 68.2
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.8e-117 425.6 307 68.1
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.8e-117 424.9 305 67.5
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 6.2e-117 424.5 303 70.0
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 8.1e-117 424.1 307 67.8
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 2.4e-116 422.5 308 66.9
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 2.4e-116 422.5 307 68.1
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 4.0e-116 421.8 307 67.4
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 5.3e-116 421.4 307 66.8
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 6.9e-116 421.0 303 66.7
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 6.9e-116 421.0 309 68.0
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.2e-115 420.2 307 68.7
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.0e-115 419.5 314 65.6
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.0e-115 419.5 309 66.7
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 9.9e-115 417.2 308 66.9
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 9.9e-115 417.2 307 67.1
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.2e-114 416.0 311 65.6
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.2e-114 416.0 306 67.0
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 2.9e-114 415.6 307 67.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 2.9e-114 415.6 307 66.8
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 2.9e-114 415.6 307 66.8
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 6.4e-114 414.5 309 66.0
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 6.4e-114 414.5 305 66.9
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.4e-114 414.5 307 67.1
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.1e-113 413.7 308 65.9
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.4e-113 413.3 307 66.8
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 2.4e-113 412.5 307 66.8
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 3.2e-113 412.1 307 66.1
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 3.2e-113 412.1 308 66.2
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 7.1e-113 411.0 306 67.0
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 9.3e-113 410.6 307 66.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 9.3e-113 410.6 303 67.3
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.6e-112 409.8 304 65.1
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 1.6e-112 409.8 309 65.4
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 2.1e-112 409.5 308 64.6
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 2.7e-112 409.1 311 64.6
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 2.7e-112 409.1 307 65.5
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.7e-112 409.1 303 66.0
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 2.7e-112 409.1 311 64.3
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 3.5e-112 408.7 308 65.6
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 6.0e-112 407.9 305 64.6
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.3e-111 406.8 304 65.1
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.3e-111 406.8 304 65.1
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 3.0e-111 405.6 307 65.1
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 3.0e-111 405.6 312 63.5
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 3.0e-111 405.6 302 68.2
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 3.9e-111 405.2 311 64.3
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 3.9e-111 405.2 311 64.0
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 6.6e-111 404.4 300 65.3
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.1e-110 403.7 339 61.9
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.5e-110 403.3 302 67.9
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.9e-110 402.9 304 64.5
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 3.3e-110 402.1 306 64.4
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 4.3e-110 401.7 331 62.2
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 7.3e-110 401.0 310 63.5
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 7.3e-110 401.0 309 64.1
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 9.6e-110 400.6 307 63.8
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 9.6e-110 400.6 311 63.0
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.6e-109 399.8 307 63.8
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.1e-109 399.4 300 64.3
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 8.1e-109 397.5 305 63.6
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 6.9e-108 394.4 305 64.6
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.2e-107 393.7 377 56.0
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.0e-107 392.9 304 61.5
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 3.4e-107 392.1 304 61.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 4.5e-107 391.7 284 67.6
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 4.5e-107 391.7 298 63.8
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.7e-106 389.8 312 64.7
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.2e-106 389.4 383 54.8
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 8.4e-106 387.5 314 62.7
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 7.9e-104 380.9 305 63.0
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 3.0e-103 379.0 234 76.1
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 8.7e-103 377.5 264 68.6
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.5e-102 376.7 309 58.9
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.1e-100 370.5 234 73.5
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 5.8e-99 364.8 305 61.0
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 7.9e-96 354.4 235 70.2
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.0e-95 352.4 307 55.0
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 2.8e-93 345.9 307 55.7
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.4e-92 342.8 264 62.9
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 3.3e-86 322.4 210 71.9
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.6e-85 320.1 265 58.9
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.9e-84 314.7 238 65.1
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 1.3e-82 310.5 302 49.0
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 4.2e-81 305.4 237 65.4
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 1.0e-74 284.3 201 71.6
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 6.1e-72 275.0 291 47.4
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 8.2e-69 264.6 216 59.7
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 3.2e-65 252.7 232 52.6
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 5.3e-60 235.3 169 72.2
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.6e-59 233.0 177 63.8
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.9e-58 229.6 237 47.3
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 3.2e-57 226.1 177 61.6
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 2.7e-56 223.0 166 67.5
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.0e-55 221.1 186 54.8
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 4.0e-55 219.2 170 61.2
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 2.5e-49 199.9 130 74.6
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 3.2e-49 199.5 129 73.6
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 1.2e-48 197.6 105 86.7
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.6e-48 196.1 130 67.7
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 9.1e-44 181.4 124 70.2
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.8e-39 167.2 143 56.6
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.4e-36 156.8 110 68.2
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.5e-33 147.5 105 67.6
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 5.6e-33 145.6 103 67.0
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.3e-33 145.2 109 67.9
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.2e-22 111.3 107 56.1
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 2.1e-19 100.5 76 63.2
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.7e-18 97.4 52 78.8
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 2.6e-06 57.0 27 77.8
EL10Ac5g11505 Beta vulgaris HOM05D005736 ORTHO05D026989 9.9e-06 55.1 32 75.0


User provided reference genes

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