Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 5.6e-99 364.4 197 100.0
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 5.1e-84 314.7 198 85.9
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 2.5e-83 312.4 195 86.7
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 1.6e-82 309.7 196 82.7
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 1.8e-81 306.2 194 83.5
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 7.5e-80 300.8 195 83.1
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 9.9e-80 300.4 194 82.0
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 1.3e-79 300.1 195 85.1
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 1.7e-79 299.7 195 81.5
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 2.9e-79 298.9 196 81.1
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 3.7e-79 298.5 196 81.6
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 6.4e-79 297.7 198 82.8
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 8.3e-79 297.4 198 82.3
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 1.1e-78 297.0 192 81.2
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 3.2e-78 295.4 198 81.8
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 7.1e-78 294.3 194 83.0
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 1.2e-77 293.5 199 80.9
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 1.2e-77 293.5 199 80.9
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.1e-77 292.7 194 82.5
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 2.7e-77 292.4 195 81.0
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 2.7e-77 292.4 195 79.5
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 4.6e-77 291.6 194 82.0
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.0e-76 290.4 195 80.5
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 1.3e-76 290.0 195 80.5
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 1.3e-76 290.0 195 79.5
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 1.7e-76 289.7 195 79.5
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 1.7e-76 289.7 195 80.5
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.7e-76 289.7 195 80.5
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.7e-76 289.7 195 80.0
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 1.7e-76 289.7 195 80.0
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 3.0e-76 288.9 196 79.6
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 6.6e-76 287.7 195 79.5
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 1.1e-75 287.0 198 76.8
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 1.1e-75 287.0 197 78.2
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.5e-75 285.8 192 79.7
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 7.3e-75 284.3 197 78.2
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 7.3e-75 284.3 198 80.8
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 7.3e-75 284.3 197 79.2
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 9.6e-75 283.9 198 75.8
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.2e-74 283.5 196 78.6
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 1.2e-74 283.5 162 92.0
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 1.6e-74 283.1 198 74.7
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.8e-74 282.3 192 78.6
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 3.6e-74 282.0 196 77.0
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 3.6e-74 282.0 198 75.8
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 3.6e-74 282.0 198 76.8
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 4.7e-74 281.6 196 79.1
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 1.1e-73 280.4 198 75.8
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 1.1e-73 280.4 190 76.8
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 1.4e-73 280.0 198 77.3
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 1.8e-73 279.6 196 76.0
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 4.0e-73 278.5 198 76.3
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 4.0e-73 278.5 190 76.8
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 6.8e-73 277.7 197 76.6
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 8.9e-73 277.3 198 76.3
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 8.9e-73 277.3 198 76.3
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 8.9e-73 277.3 198 76.3
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 8.9e-73 277.3 198 76.3
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 8.9e-73 277.3 190 75.8
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 1.2e-72 276.9 198 73.2
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 2.0e-72 276.2 198 78.3
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 2.6e-72 275.8 198 76.3
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 3.4e-72 275.4 197 75.1
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 4.4e-72 275.0 198 75.8
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 4.4e-72 275.0 198 75.8
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 4.4e-72 275.0 198 75.8
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 7.6e-72 274.2 195 78.5
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 7.6e-72 274.2 198 72.7
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 7.6e-72 274.2 198 76.3
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 9.9e-72 273.9 198 75.3
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 1.7e-71 273.1 196 75.5
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 2.2e-71 272.7 215 71.6
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 2.9e-71 272.3 194 72.7
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 2.9e-71 272.3 197 75.1
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 3.8e-71 271.9 199 74.4
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 6.4e-71 271.2 197 77.2
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 1.1e-70 270.4 200 74.0
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 4.2e-70 268.5 162 86.4
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 5.4e-70 268.1 199 72.4
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 7.1e-70 267.7 191 75.4
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 9.3e-70 267.3 150 92.7
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 3.5e-69 265.4 199 72.4
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 6.0e-69 264.6 196 74.5
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 6.0e-69 264.6 198 71.7
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 6.6e-68 261.2 202 72.3
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 6.6e-68 261.2 197 71.6
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 1.1e-67 260.4 197 71.1
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 1.5e-67 260.0 200 70.0
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 2.5e-67 259.2 197 72.6
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 3.3e-67 258.8 190 74.7
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 7.3e-67 257.7 197 74.1
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 9.6e-67 257.3 190 74.7
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 9.6e-67 257.3 197 72.1
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 1.6e-66 256.5 196 73.0
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 4.8e-66 255.0 197 69.5
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 6.2e-66 254.6 192 71.9
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 1.0e-60 237.3 148 84.5
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 1.9e-59 233.0 198 63.1
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 2.9e-47 192.6 201 55.2
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 1.9e-46 189.9 196 51.5
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 2.1e-45 186.4 105 94.3
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 1.9e-43 179.9 140 70.0
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 1.2e-40 170.6 157 54.1
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.2e-40 170.6 158 55.7
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.2e-40 170.6 158 55.7
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.6e-40 169.5 199 49.7
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.4e-40 169.1 199 49.7
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 5.0e-39 165.2 103 83.5
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 1.4e-38 163.7 94 90.4
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 3.5e-37 159.1 102 81.4
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 6.1e-37 158.3 161 50.3
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 1.5e-35 153.7 103 79.6
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 3.1e-33 146.0 124 68.5
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 9.4e-30 134.4 90 80.0
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 7.4e-27 124.8 86 69.8
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 6.3e-26 121.7 91 74.7
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 5.9e-24 115.2 71 83.1
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 8.5e-23 111.3 152 40.8
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 1.0e-20 104.4 92 64.1
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 2.6e-19 99.8 157 35.7
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 4.8e-18 95.5 88 61.4
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 1.2e-16 90.9 170 31.2
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 3.8e-15 85.9 72 58.3
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 1.8e-12 77.0 156 34.0
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.8e-12 77.0 120 44.2
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 8.2e-10 68.2 44 70.5
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 1.0e-07 61.2 98 42.9
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 6.5e-07 58.5 48 64.6


User provided reference genes

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