Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc4613.1 Carica papaya HOM05D000147 ORTHO05D005950 2.5e-43 178.3 87 100.0
Haze_06859 Corylus avellana HOM05D000147 ORTHO05D005950 4.6e-29 131.0 85 72.9
CiPaw.10G074700 Carya illinoinensis HOM05D000147 ORTHO05D005950 1.0e-28 129.8 87 72.4
Cfa000159 Carpinus fangiana HOM05D000147 ORTHO05D005950 2.3e-28 128.6 85 71.8
Manes.16G002800 Manihot esculenta HOM05D000147 ORTHO05D005950 3.9e-28 127.9 80 76.2
TWI38G0618 Tripterygium wilfordii HOM05D000147 ORTHO05D005950 6.6e-28 127.1 87 70.1
Potri.004G004000 Populus trichocarpa HOM05D000147 ORTHO05D005950 8.6e-28 126.7 81 75.3
Atru.chr10.2285 Acer truncatum HOM05D000147 ORTHO05D005950 1.1e-27 126.3 85 70.6
VMungo0540G1662 Vigna mungo HOM05D000147 ORTHO05D005950 1.5e-27 125.9 85 71.8
CiPaw.09G098300 Carya illinoinensis HOM05D000147 ORTHO05D005950 2.5e-27 125.2 87 69.0
QL05p071825 Quercus lobata HOM05D000147 ORTHO05D005950 2.5e-27 125.2 85 72.9
Thecc.06G228500 Theobroma cacao HOM05D000147 ORTHO05D005950 2.5e-27 125.2 78 75.6
Glyma.15G112100 Glycine max HOM05D000147 ORTHO05D005950 3.3e-27 124.8 85 69.4
Ciclev10014675m.g Citrus clementina HOM05D000147 ORTHO05D005950 4.3e-27 124.4 85 70.6
Phvul.006G145500 Phaseolus vulgaris HOM05D000147 ORTHO05D005950 9.5e-27 123.2 87 70.1
Lj6g0003893 Lotus japonicus HOM05D000147 ORTHO05D005950 2.8e-26 121.7 86 70.9
BcaB01g01796 Brassica carinata HOM05D000147 ORTHO05D005950 8.1e-26 120.2 80 71.2
Carub.0006s3209 Capsella rubella HOM05D000147 ORTHO05D005950 1.4e-25 119.4 74 75.7
AT4G04180 Arabidopsis thaliana HOM05D000147 ORTHO05D005950 1.8e-25 119.0 74 75.7
AL6G47800 Arabidopsis lyrata HOM05D000070 ORTHO05D005950 4.0e-25 117.9 74 74.3
Sp6g04620 Schrenkiella parvula HOM05D000070 ORTHO05D005950 6.8e-25 117.1 76 72.4
Gorai.010G184000 Gossypium raimondii HOM05D000147 ORTHO05D005950 8.9e-25 116.7 85 67.1
PGR042G1740 Punica granatum HOM05D000147 ORTHO05D005950 8.9e-25 116.7 87 65.5
ClCG01G021650 Citrullus lanatus HOM05D000070 ORTHO05D005950 1.5e-24 115.9 80 66.2
Thhalv10028536m.g Eutrema salsugineum HOM05D000070 ORTHO05D005950 1.5e-24 115.9 74 73.0
Psat1g178560 Pisum sativum HOM05D000147 ORTHO05D005950 1.5e-24 115.9 85 65.9
MELO3C007419.2 Cucumis melo HOM05D000147 ORTHO05D005950 2.0e-24 115.5 80 66.2
Duzib235G0285 Durio zibethinus HOM05D000070 ORTHO05D005950 2.0e-24 115.5 85 65.9
Gohir.D06G157500 Gossypium hirsutum HOM05D000070 ORTHO05D005950 2.0e-24 115.5 85 65.9
MD10G1327000 Malus domestica HOM05D000147 ORTHO05D005950 2.6e-24 115.2 86 66.3
arahy.Tifrunner.gnm1.ann1.D0808P Arachis hypogaea HOM05D000147 ORTHO05D005950 4.4e-24 114.4 81 69.1
BcaC04g21269 Brassica carinata HOM05D000147 ORTHO05D005950 4.4e-24 114.4 82 68.3
BcaC04g21279 Brassica carinata HOM05D000147 ORTHO05D005950 4.4e-24 114.4 82 68.3
arahy.Tifrunner.gnm1.ann1.0743V5 Arachis hypogaea HOM05D000147 ORTHO05D005950 5.8e-24 114.0 86 65.1
C09p33620 Brassica napus HOM05D000147 ORTHO05D005950 5.8e-24 114.0 81 69.1
BolC9t56196H Brassica oleracea HOM05D000147 ORTHO05D005950 5.8e-24 114.0 81 69.1
Lalb_Chr15g0087801 Lupinus albus HOM05D000147 ORTHO05D005950 5.8e-24 114.0 85 67.1
Prupe.4G015000 Prunus persica HOM05D000147 ORTHO05D005950 5.8e-24 114.0 85 63.5
Actinidia02343 Actinidia chinensis HOM05D000070 ORTHO05D005950 9.9e-24 113.2 80 68.8
CARHR253340 Cardamine hirsuta HOM05D000147 ORTHO05D005950 9.9e-24 113.2 72 75.0
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.3e-23 112.8 84 66.7
Ca_00695_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005950 1.3e-23 112.8 85 64.7
Sed0005764 Sechium edule HOM05D000147 ORTHO05D005950 1.3e-23 112.8 85 63.5
CSS0044927 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005950 1.7e-23 112.5 86 64.0
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 1.7e-23 112.5 86 64.0
Eucgr.E03984 Eucalyptus grandis HOM05D000147 ORTHO05D005950 1.7e-23 112.5 82 62.2
Gohir.A06G151300 Gossypium hirsutum HOM05D000070 ORTHO05D005950 1.7e-23 112.5 85 64.7
TAR627G0320 Trochodendron aralioides HOM05D000147 ORTHO05D005950 1.7e-23 112.5 84 65.5
A09p26440 Brassica napus HOM05D000147 ORTHO05D005950 2.2e-23 112.1 85 67.1
BraA09t38218Z Brassica rapa HOM05D000147 ORTHO05D005950 2.2e-23 112.1 85 67.1
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.2e-23 112.1 85 65.9
Sc24g0000260 Simmondsia chinensis HOM05D000147 ORTHO05D005950 2.2e-23 112.1 85 62.4
THA.LOC104813427 Tarenaya hassleriana HOM05D000147 ORTHO05D005950 2.2e-23 112.1 84 66.7
TAR627G0645 Trochodendron aralioides HOM05D000147 ORTHO05D005950 6.4e-23 110.5 84 64.3
Cc09_g01170 Coffea canephora HOM05D000070 ORTHO05D005950 8.3e-23 110.2 86 64.0
CsaV3_6G048710 Cucumis sativus L. HOM05D000070 ORTHO05D005950 1.1e-22 109.8 85 60.0
Sabra04G0002200 Salix brachista HOM05D000147 ORTHO05D005950 1.1e-22 109.8 113 54.9
Duzib160G0363 Durio zibethinus HOM05D002056 ORTHO05D005950 1.9e-22 109.0 78 69.2
Migut.M01369 Erythranthe guttata HOM05D000147 ORTHO05D005950 3.2e-22 108.2 85 61.2
CANSAT56G0204 Cannabis sativa HOM05D000070 ORTHO05D005950 4.1e-22 107.8 77 71.4
TPR.G13001 Trifolium pratense HOM05D000147 ORTHO05D005950 4.1e-22 107.8 87 58.6
GSVIVG01004817001 Vitis vinifera HOM05D000070 ORTHO05D005950 4.1e-22 107.8 87 55.2
ECA236G4610 Erigeron canadensis HOM05D002056 ORTHO05D005950 5.4e-22 107.5 75 66.7
vmacro03663 Vaccinium macrocarpon HOM05D000147 ORTHO05D005950 5.4e-22 107.5 85 63.5
SalBow8G0879 Salvia bowleyana HOM05D000070 ORTHO05D005950 9.2e-22 106.7 77 66.2
Hund23430 Selenicereus undatus HOM05D000147 ORTHO05D005950 9.2e-22 106.7 72 70.8
FvH4_6g05890 Fragaria vesca HOM05D000147 ORTHO05D005950 1.2e-21 106.3 84 58.3
FAN05G0232 Fragaria x ananassa HOM05D000147 ORTHO05D005950 1.2e-21 106.3 84 58.3
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.2e-21 106.3 84 58.3
RcHm_v2.0_Chr5g0002011 Rosa chinensis HOM05D000147 ORTHO05D005950 1.2e-21 106.3 86 55.8
AUR62012759 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.6e-21 105.9 82 61.0
DCAR_024984 Daucus carota HOM05D000147 ORTHO05D005950 1.6e-21 105.9 85 58.8
FAN05G2764 Fragaria x ananassa HOM05D000070 ORTHO05D005950 1.6e-21 105.9 84 58.3
Nn1g07278 Nelumbo nucifera HOM05D000147 ORTHO05D005950 1.6e-21 105.9 81 61.7
Actinidia26885 Actinidia chinensis HOM05D000147 ORTHO05D005950 2.1e-21 105.5 85 63.5
MSTRG.7181 Avicennia marina HOM05D000070 ORTHO05D005950 2.1e-21 105.5 85 57.6
FAN09G4350 Fragaria x ananassa HOM05D000001 ORTHO05D005950 2.1e-21 105.5 84 58.3
FvH4_3g01380 Fragaria vesca HOM05D000147 ORTHO05D005950 2.7e-21 105.1 83 57.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 4.6e-21 104.4 69 66.7
HanXRQChr15g0470791 Helianthus annuus HOM05D000147 ORTHO05D005950 4.6e-21 104.4 73 65.8
Medtr2g024440 Medicago truncatula HOM05D000147 ORTHO05D005950 6.0e-21 104.0 85 60.0
Hma1.2p1_0298F.1_g117450 Hydrangea macrophylla HOM05D000147 ORTHO05D005950 1.0e-20 103.2 81 64.2
Rhsim13G0150000 Rhododendron simsii HOM05D000147 ORTHO05D005950 1.0e-20 103.2 85 61.2
Aqoxy1G02947 Aquilegia oxysepala HOM05D000147 ORTHO05D005950 1.3e-20 102.8 88 55.7
AUR62021899 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.7e-20 102.4 82 58.5
Lj1C1236T15 Lonicera japonica HOM05D000147 ORTHO05D005950 1.7e-20 102.4 83 66.3
PSO541G0930 Papaver somniferum HOM05D000147 ORTHO05D005950 1.7e-20 102.4 85 64.7
Peaxi162Scf00294g00915 Petunia axillaris HOM05D000147 ORTHO05D005950 1.7e-20 102.4 74 63.5
MBI02_g15375_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D005950 2.3e-20 102.1 80 61.2
PSO675G5655 Papaver somniferum HOM05D000147 ORTHO05D005950 3.0e-20 101.7 85 62.4
Lsat_1_v5_gn_7_14900 Lactuca sativa HOM05D000147 ORTHO05D005950 5.1e-20 100.9 74 64.9
CDE07G0653 Ceratophyllum demersum HOM05D000147 ORTHO05D005950 8.6e-20 100.1 66 68.2
AUR62015275 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.1e-19 99.8 65 66.2
Oeu002750.1 Olea europaea HOM05D000070 ORTHO05D005950 1.5e-19 99.4 85 56.5
Nitab4.5_0005882g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005950 7.3e-19 97.1 85 55.3
SGA_v2.0_scaffold7G03784 Striga asiatica HOM05D000070 ORTHO05D005950 7.3e-19 97.1 85 52.9
Nitab4.5_0000005g0030 Nicotiana tabacum HOM05D000070 ORTHO05D005950 1.2e-18 96.3 85 54.1
CAN.G23.7 Capsicum annuum HOM05D000070 ORTHO05D005950 1.6e-18 95.9 73 60.3
Zm00001eb254090 Zea mays HOM05D000070 ORTHO05D005950 4.7e-18 94.4 84 52.4
Sopen02g011700 Solanum pennellii HOM05D000070 ORTHO05D005950 6.2e-18 94.0 69 62.3
PGSC0003DMG402021461 Solanum tuberosum HOM05D000070 ORTHO05D005950 8.1e-18 93.6 69 62.3
Solyc02g036330.3 Solanum lycopersicum HOM05D000070 ORTHO05D005950 1.4e-17 92.8 69 62.3
ATR1149G150 Amborella trichopoda HOM05D000147 ORTHO05D005950 1.8e-17 92.4 80 53.8
Os02g0740300 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D005950 2.0e-16 89.0 78 53.8
AUR62018072 Chenopodium quinoa HOM05D000070 ORTHO05D005950 4.4e-16 87.8 57 68.4
unitig_748.g7944 Utricularia gibba HOM05D000070 ORTHO05D005950 4.4e-16 87.8 73 56.2
Pp3c15_4440 Physcomitrium patens HOM05D000147 ORTHO05D005950 1.7e-15 85.9 86 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1371 Anthoceros agrestis HOM05D000147 ORTHO05D005950 1.4e-14 82.8 66 59.1
SMO358G0508 Selaginella moellendorffii HOM05D000147 ORTHO05D005950 3.2e-14 81.6 86 46.5
FAN21G3947 Fragaria x ananassa HOM05D000147 ORTHO05D005950 3.5e-13 78.2 56 66.1
Mapoly0087s0007 Marchantia polymorpha HOM05D000147 ORTHO05D005950 6.0e-13 77.4 63 52.4
EL10Ac8g20131 Beta vulgaris HOM05D000147 ORTHO05D005950 3.9e-12 74.7 86 46.5
BcaC09g49931 Brassica carinata HOM05D000147 ORTHO05D005950 2.1e-10 68.9 57 54.4
C01p31100 Brassica napus HOM05D000147 ORTHO05D005950 2.8e-10 68.6 57 54.4
AUR62017523 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.2e-08 63.2 49 53.1
MCO05G586 Micromonas commoda HOM05D000070 ORTHO05D005950 1.5e-08 62.8 73 43.8
DCAR_023867 Daucus carota HOM05D000560 ORTHO05D005950 1.7e-07 59.3 61 45.9
HPP92_018026 Vanilla planifolia HOM05D000147 ORTHO05D005950 6.4e-07 57.4 73 45.2
Cre17.g726150 Chlamydomonas reinhardtii HOM05D000147 ORTHO05D005950 2.4e-06 55.5 70 40.0
SHI02238 Sapria himalayana HOM05D000147 ORTHO05D005950 2.4e-06 55.5 63 50.8


User provided reference genes

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