Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.99 Carica papaya HOM05D000452 ORTHO05D016905 1.4e-78 296.2 153 100.0
Sabra18G0096200 Salix brachista HOM05D000452 ORTHO05D000647 3.4e-19 99.0 56 80.4
Sabra06G0145500 Salix brachista HOM05D000452 ORTHO05D000647 5.8e-19 98.2 61 77.0
Ciclev10007533m.g Citrus clementina HOM05D000452 ORTHO05D000647 7.5e-19 97.8 61 78.7
MD02G1283900 Malus domestica HOM05D000452 ORTHO05D000647 7.5e-19 97.8 103 54.4
CANSAT11G1350 Cannabis sativa HOM05D000452 ORTHO05D000647 9.8e-19 97.4 61 75.4
CiPaw.15G179200 Carya illinoinensis HOM05D000452 ORTHO05D000647 9.8e-19 97.4 61 77.0
FvH4_7g03330 Fragaria vesca HOM05D000452 ORTHO05D000647 1.7e-18 96.7 61 75.4
FAN01G1180 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.7e-18 96.7 61 75.4
FAN03G2109 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.7e-18 96.7 61 75.4
FAN06G1990 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.7e-18 96.7 61 75.4
FAN10G0162 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.7e-18 96.7 61 75.4
COL.COLO4_18731 Corchorus olitorius HOM05D000452 ORTHO05D000647 2.2e-18 96.3 61 75.4
Prupe.2G038700 Prunus persica HOM05D000452 ORTHO05D000647 2.2e-18 96.3 103 52.4
RcHm_v2.0_Chr1g0325641 Rosa chinensis HOM05D000452 ORTHO05D000647 2.2e-18 96.3 61 75.4
Lj4g0005431 Lotus japonicus HOM05D000452 ORTHO05D000647 2.9e-18 95.9 61 73.8
arahy.Tifrunner.gnm1.ann1.G6MTT1 Arachis hypogaea HOM05D000452 ORTHO05D000647 3.7e-18 95.5 61 73.8
arahy.Tifrunner.gnm1.ann1.P5Q0L9 Arachis hypogaea HOM05D000452 ORTHO05D000647 3.7e-18 95.5 61 73.8
Nitab4.5_0001671g0070 Nicotiana tabacum HOM05D000452 ORTHO05D000647 3.7e-18 95.5 61 78.7
Potri.018G113100 Populus trichocarpa HOM05D000452 ORTHO05D000647 3.7e-18 95.5 54 77.8
TWI34G1684 Tripterygium wilfordii HOM05D000452 ORTHO05D000647 3.7e-18 95.5 51 82.4
Thecc.09G037200 Theobroma cacao HOM05D000452 ORTHO05D000647 4.9e-18 95.1 61 75.4
Haze_19302 Corylus avellana HOM05D000452 ORTHO05D000647 6.4e-18 94.7 98 57.1
Eucgr.C04062 Eucalyptus grandis HOM05D000452 ORTHO05D000647 8.3e-18 94.4 61 72.1
FAN19G0353 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.4e-17 93.6 107 50.5
FAN28G0115 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.4e-17 93.6 107 50.5
MD15G1157900 Malus domestica HOM05D000452 ORTHO05D000647 1.4e-17 93.6 98 54.1
Medtr4g116840 Medicago truncatula HOM05D000452 ORTHO05D000647 1.4e-17 93.6 61 73.8
RcHm_v2.0_Chr2g0086461 Rosa chinensis HOM05D000452 ORTHO05D000647 1.4e-17 93.6 92 56.5
Sopen07g001110 Solanum pennellii HOM05D000452 ORTHO05D000647 1.4e-17 93.6 61 72.1
Prupe.7G253100 Prunus persica HOM05D000452 ORTHO05D000647 2.4e-17 92.8 98 53.1
QL02p091578 Quercus lobata HOM05D000452 ORTHO05D000647 2.4e-17 92.8 61 75.4
Solyc07g005000.3 Solanum lycopersicum HOM05D000452 ORTHO05D000647 2.4e-17 92.8 61 70.5
Cfa020873 Carpinus fangiana HOM05D000452 ORTHO05D000647 3.2e-17 92.4 98 57.1
Gohir.A07G025000 Gossypium hirsutum HOM05D000452 ORTHO05D000647 3.2e-17 92.4 61 77.0
Gohir.D07G028500 Gossypium hirsutum HOM05D000452 ORTHO05D000647 3.2e-17 92.4 61 77.0
Gorai.001G029800 Gossypium raimondii HOM05D000452 ORTHO05D000647 3.2e-17 92.4 61 77.0
TAR383G0911 Trochodendron aralioides HOM05D000452 ORTHO05D000647 3.2e-17 92.4 61 72.1
Manes.06G040600 Manihot esculenta HOM05D000452 ORTHO05D000647 4.1e-17 92.0 98 53.1
Atru.chr7.196 Acer truncatum HOM05D000452 ORTHO05D000647 5.4e-17 91.7 61 73.8
CiPaw.16G116900 Carya illinoinensis HOM05D000452 ORTHO05D000647 5.4e-17 91.7 98 55.1
Ca_21606_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 5.4e-17 91.7 61 70.5
Ca_21629_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 5.4e-17 91.7 61 70.5
FvH4_1g01530 Fragaria vesca HOM05D000452 ORTHO05D000647 5.4e-17 91.7 92 54.3
FAN23G1964 Fragaria x ananassa HOM05D000452 ORTHO05D000647 5.4e-17 91.7 92 54.3
Lj9C710G10 Lonicera japonica HOM05D000452 ORTHO05D000647 5.4e-17 91.7 67 68.7
Lalb_Chr12g0198541 Lupinus albus HOM05D000452 ORTHO05D000647 5.4e-17 91.7 61 70.5
Manes.14G140000 Manihot esculenta HOM05D000452 ORTHO05D000647 5.4e-17 91.7 98 54.1
Nitab4.5_0004050g0030 Nicotiana tabacum HOM05D000452 ORTHO05D000647 5.4e-17 91.7 61 73.8
CAN.G520.40 Capsicum annuum HOM05D000452 ORTHO05D000647 7.1e-17 91.3 61 73.8
ClCG11G003630 Citrullus lanatus HOM05D000452 ORTHO05D000647 7.1e-17 91.3 61 73.8
Psat4g034120 Pisum sativum HOM05D000452 ORTHO05D000647 7.1e-17 91.3 61 70.5
Nn2g12264 Nelumbo nucifera HOM05D000452 ORTHO05D000647 1.2e-16 90.5 61 70.5
Sed0003353 Sechium edule HOM05D000452 ORTHO05D000647 1.2e-16 90.5 61 75.4
Cc06_g07340 Coffea canephora HOM05D000452 ORTHO05D000647 1.6e-16 90.1 63 66.7
Medtr2g449780 Medicago truncatula HOM05D000452 ORTHO05D000647 1.6e-16 90.1 61 72.1
AT5G35180 Arabidopsis thaliana HOM05D000452 ORTHO05D000647 2.1e-16 89.7 51 74.5
CsaV3_2G003480 Cucumis sativus L. HOM05D000452 ORTHO05D000647 2.1e-16 89.7 61 72.1
MBI15_g29777_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 2.1e-16 89.7 56 73.2
Peaxi162Scf00347g00326 Petunia axillaris HOM05D000452 ORTHO05D000647 2.1e-16 89.7 61 67.2
Sed0007575 Sechium edule HOM05D000452 ORTHO05D000647 2.1e-16 89.7 61 72.1
Glyma.13G156600 Glycine max HOM05D000452 ORTHO05D000647 2.7e-16 89.4 98 53.1
HanXRQChr09g0243291 Helianthus annuus HOM05D000452 ORTHO05D000647 2.7e-16 89.4 67 68.7
Aqoxy7G03511 Aquilegia oxysepala HOM05D000452 ORTHO05D000647 3.5e-16 89.0 61 72.1
Lalb_Chr08g0233851 Lupinus albus HOM05D000452 ORTHO05D000647 3.5e-16 89.0 67 68.7
MELO3C004450.2 Cucumis melo HOM05D000452 ORTHO05D000647 4.6e-16 88.6 61 70.5
Gohir.A02G057001 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.6e-16 88.6 61 70.5
Hma1.2p1_0182F.1_g080630 Hydrangea macrophylla HOM05D000452 ORTHO05D000647 4.6e-16 88.6 61 72.1
Lj6g0026902 Lotus japonicus HOM05D000452 ORTHO05D000647 4.6e-16 88.6 68 66.2
TPR.G15783 Trifolium pratense HOM05D000452 ORTHO05D000647 4.6e-16 88.6 98 52.0
GSVIVG01001043001 Vitis vinifera HOM05D000452 ORTHO05D000647 4.6e-16 88.6 62 66.1
Nn8g39750 Nelumbo nucifera HOM05D000452 ORTHO05D000647 6.0e-16 88.2 61 72.1
Carub.0007s3101 Capsella rubella HOM05D000452 ORTHO05D000647 7.8e-16 87.8 98 50.0
Glyma.17G104200 Glycine max HOM05D000452 ORTHO05D000647 7.8e-16 87.8 98 52.0
Gorai.009G053100 Gossypium raimondii HOM05D000452 ORTHO05D000647 7.8e-16 87.8 61 70.5
VMungo1215G2021 Vigna mungo HOM05D000452 ORTHO05D000647 7.8e-16 87.8 98 51.0
Aa31LG9G6040 Aethionema arabicum HOM05D000452 ORTHO05D000647 1.0e-15 87.4 51 74.5
AL7G44030 Arabidopsis lyrata HOM05D000452 ORTHO05D000647 1.0e-15 87.4 98 50.0
HanXRQChr05g0141531 Helianthus annuus HOM05D000452 ORTHO05D000647 1.0e-15 87.4 61 72.1
Lsat_1_v5_gn_7_47401 Lactuca sativa HOM05D000452 ORTHO05D000647 1.0e-15 87.4 61 67.2
MBI15_g39628_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 1.0e-15 87.4 51 76.5
Os08g0439100 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 1.0e-15 87.4 61 70.5
CARHR217280 Cardamine hirsuta HOM05D000452 ORTHO05D000647 1.3e-15 87.0 98 50.0
Nitab4.5_0000416g0020 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.3e-15 87.0 58 77.6
AUR62042022 Chenopodium quinoa HOM05D000452 ORTHO05D000647 1.7e-15 86.7 61 68.9
Migut.K00364 Erythranthe guttata HOM05D000452 ORTHO05D000647 1.7e-15 86.7 63 68.3
HanXRQChr10g0281641 Helianthus annuus HOM05D000452 ORTHO05D000647 1.7e-15 86.7 61 70.5
Thhalv10003438m.g Eutrema salsugineum HOM05D000452 ORTHO05D000647 2.3e-15 86.3 54 68.5
Rhsim01G0049500 Rhododendron simsii HOM05D000452 ORTHO05D000647 2.3e-15 86.3 61 70.5
Lsat_1_v5_gn_8_60041 Lactuca sativa HOM05D000452 ORTHO05D000647 3.0e-15 85.9 61 72.1
ATR0629G037 Amborella trichopoda HOM05D000452 ORTHO05D000647 3.9e-15 85.5 61 67.2
BcaC07g37673 Brassica carinata HOM05D000452 ORTHO05D000647 3.9e-15 85.5 98 50.0
A08p09630 Brassica napus HOM05D000452 ORTHO05D000647 3.9e-15 85.5 98 50.0
BolC8t48044H Brassica oleracea HOM05D000452 ORTHO05D000647 3.9e-15 85.5 98 50.0
BraA08t32960Z Brassica rapa HOM05D000452 ORTHO05D000647 3.9e-15 85.5 98 50.0
TPR.G31931 Trifolium pratense HOM05D000452 ORTHO05D000647 3.9e-15 85.5 59 74.6
Zm00001eb041240 Zea mays HOM05D000452 ORTHO05D000647 3.9e-15 85.5 61 68.9
CSS0047494 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 5.1e-15 85.1 102 51.0
CSS0048847 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 5.1e-15 85.1 61 70.5
FAN26G2398 Fragaria x ananassa HOM05D000452 ORTHO05D000647 5.1e-15 85.1 114 46.5
Glyma.15G208700 Glycine max HOM05D000452 ORTHO05D000647 5.1e-15 85.1 61 68.9
Dinv41415 Davidia involucrata HOM05D000452 ORTHO05D000647 6.6e-15 84.7 103 49.5
Psat0s2644g0040 Pisum sativum HOM05D000452 ORTHO05D000647 6.6e-15 84.7 61 70.5
Dinv42903 Davidia involucrata HOM05D000452 ORTHO05D000647 8.6e-15 84.3 61 67.2
Dinv43198 Davidia involucrata HOM05D000452 ORTHO05D000647 8.6e-15 84.3 61 67.2
ECA236G0118 Erigeron canadensis HOM05D000452 ORTHO05D000647 8.6e-15 84.3 61 67.2
Phvul.009G208400 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 1.1e-14 84.0 61 70.5
DCAR_014828 Daucus carota HOM05D000452 ORTHO05D000647 1.5e-14 83.6 61 70.5
PSO063G6842 Papaver somniferum HOM05D000452 ORTHO05D000647 1.5e-14 83.6 98 53.1
PSO421G0133 Papaver somniferum HOM05D000452 ORTHO05D000647 1.5e-14 83.6 98 53.1
BcaB04g18057 Brassica carinata HOM05D000452 ORTHO05D000647 3.3e-14 82.4 98 46.9
SGA_v2.0_scaffold183G39856 Striga asiatica HOM05D000452 ORTHO05D000647 4.3e-14 82.0 104 47.1
VMungo1309G0535 Vigna mungo HOM05D000452 ORTHO05D000647 4.3e-14 82.0 51 74.5
SHI03232 Sapria himalayana HOM05D000452 ORTHO05D000647 7.3e-14 81.3 61 62.3
unitig_736.g22222 Utricularia gibba HOM05D000452 ORTHO05D000647 7.3e-14 81.3 61 65.6
vmacro21878 Vaccinium macrocarpon HOM05D000452 ORTHO05D000647 7.3e-14 81.3 61 68.9
HPP92_018516 Vanilla planifolia HOM05D000452 ORTHO05D000647 9.5e-14 80.9 61 62.3
Sp7g07190 Schrenkiella parvula HOM05D000452 ORTHO05D000647 1.6e-13 80.1 98 46.9
Pp3c6_26940 Physcomitrium patens HOM05D000452 ORTHO05D000647 2.8e-13 79.3 64 64.1
AagrBONN_evm.TU.Sc2ySwM_344.1413 Anthoceros agrestis HOM05D000452 ORTHO05D000647 6.2e-13 78.2 63 61.9
Pp3c3_27440 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.1e-12 77.4 51 66.7
Oeu050463.2 Olea europaea HOM05D000452 ORTHO05D000647 1.4e-12 77.0 103 44.7
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 1.8e-12 76.6 98 50.0
MSTRG.26311 Avicennia marina HOM05D000452 ORTHO05D000647 3.1e-12 75.9 100 46.0
SMO367G0695 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 5.2e-12 75.1 61 59.0
Sc08g0004960 Simmondsia chinensis HOM05D000452 ORTHO05D000647 5.2e-12 75.1 61 62.3
Pp3c10_12000 Physcomitrium patens HOM05D000452 ORTHO05D000647 8.9e-12 74.3 65 60.0
SMO140G0087 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 3.4e-11 72.4 98 49.0
Pp3c12_9430 Physcomitrium patens HOM05D000452 ORTHO05D000647 4.4e-11 72.0 65 58.5
Duzib150G1465 Durio zibethinus HOM05D000452 ORTHO05D000647 2.2e-10 69.7 46 67.4
Mapoly0103s0001 Marchantia polymorpha HOM05D000452 ORTHO05D000647 1.4e-09 67.0 63 55.6
Gohir.A05G049600 Gossypium hirsutum HOM05D000452 ORTHO05D000647 1.2e-08 63.9 46 63.0
Gohir.D05G051400 Gossypium hirsutum HOM05D000452 ORTHO05D000647 2.1e-08 63.2 46 63.0
Lalb_Chr13g0301151 Lupinus albus HOM05D000452 ORTHO05D000647 1.3e-07 60.5 35 65.7
THA.LOC104815402 Tarenaya hassleriana HOM05D000452 ORTHO05D000647 1.7e-07 60.1 35 71.4
EL10Ac8g18831 Beta vulgaris HOM05D000452 ORTHO05D000647 5.1e-07 58.5 98 41.8
CBR_g29261 Chara braunii HOM05D000452 ORTHO05D000647 3.3e-06 55.8 61 47.5
MELO3C019849.2 Cucumis melo HOM05D022871 ORTHO05D016905 5.6e-06 55.1 31 77.4
MELO3C027483.2 Cucumis melo HOM05D013600 ORTHO05D016905 5.6e-06 55.1 33 69.7


User provided reference genes

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