Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.98 Carica papaya HOM05D000452 ORTHO05D000647 5.8e-22 106.7 55 100.0
Lj9C710G10 Lonicera japonica HOM05D000452 ORTHO05D000647 7.4e-09 63.2 41 80.5
Cc06_g07340 Coffea canephora HOM05D000452 ORTHO05D000647 1.3e-08 62.4 51 62.7
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 1.6e-08 62.0 37 86.5
arahy.Tifrunner.gnm1.ann1.I6E49E Arachis hypogaea HOM05D000452 ORTHO05D000647 2.2e-08 61.6 38 78.9
Ca_02482_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Ciclev10007533m.g Citrus clementina HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Duzib150G1465 Durio zibethinus HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Gohir.A07G025000 Gossypium hirsutum HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Lj6g0026902 Lotus japonicus HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Lalb_Chr08g0233851 Lupinus albus HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Manes.14G140000 Manihot esculenta HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Medtr2g449780 Medicago truncatula HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Psat0s2644g0040 Pisum sativum HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
Thecc.09G037200 Theobroma cacao HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
TPR.G31931 Trifolium pratense HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
VMungo1215G2021 Vigna mungo HOM05D000452 ORTHO05D000647 2.8e-08 61.2 38 81.6
ATR0629G037 Amborella trichopoda HOM05D000452 ORTHO05D000647 3.7e-08 60.8 41 73.2
CANSAT11G1350 Cannabis sativa HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
CAN.G520.40 Capsicum annuum HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
Glyma.15G208700 Glycine max HOM05D000452 ORTHO05D000647 3.7e-08 60.8 37 83.8
Lalb_Chr12g0198541 Lupinus albus HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
Mapoly0103s0001 Marchantia polymorpha HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
Medtr4g116840 Medicago truncatula HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
Nitab4.5_0004050g0030 Nicotiana tabacum HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
Peaxi162Scf00347g00326 Petunia axillaris HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
Phvul.009G208400 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 3.7e-08 60.8 37 83.8
Sabra06G0145500 Salix brachista HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
TPR.G15783 Trifolium pratense HOM05D000452 ORTHO05D000647 3.7e-08 60.8 38 81.6
TWI34G1684 Tripterygium wilfordii HOM05D000452 ORTHO05D000647 3.7e-08 60.8 37 83.8
VMungo1309G0535 Vigna mungo HOM05D000452 ORTHO05D000647 3.7e-08 60.8 37 83.8
Zm00001eb041240 Zea mays HOM05D000452 ORTHO05D000647 3.7e-08 60.8 37 81.1
CiPaw.15G179200 Carya illinoinensis HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
CiPaw.16G116900 Carya illinoinensis HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
AUR62042022 Chenopodium quinoa HOM05D000452 ORTHO05D000647 4.8e-08 60.5 36 86.1
COL.COLO4_18731 Corchorus olitorius HOM05D000452 ORTHO05D000647 4.8e-08 60.5 36 86.1
Dinv41415 Davidia involucrata HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
Dinv42903 Davidia involucrata HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
Dinv43198 Davidia involucrata HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
FvH4_1g01530 Fragaria vesca HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
FAN19G0353 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
FAN23G1964 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
FAN26G2398 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
FAN28G0115 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
Gohir.A05G049600 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.8e-08 60.5 36 86.1
Gohir.D05G051400 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.8e-08 60.5 36 86.1
Gohir.D07G028500 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.8e-08 60.5 36 86.1
Gorai.001G029800 Gossypium raimondii HOM05D000452 ORTHO05D000647 4.8e-08 60.5 36 86.1
Gorai.009G053100 Gossypium raimondii HOM05D000452 ORTHO05D000647 4.8e-08 60.5 36 86.1
Lalb_Chr13g0301141 Lupinus albus HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
Prupe.7G253100 Prunus persica HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
QL02p091578 Quercus lobata HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
RcHm_v2.0_Chr2g0086461 Rosa chinensis HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
Solyc07g005000.3 Solanum lycopersicum HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
Sopen07g001110 Solanum pennellii HOM05D000452 ORTHO05D000647 4.8e-08 60.5 38 78.9
EL10Ac8g18831 Beta vulgaris HOM05D000452 ORTHO05D000647 6.3e-08 60.1 36 83.3
ClCG11G003630 Citrullus lanatus HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 78.9
CsaV3_2G003480 Cucumis sativus L. HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 78.9
ECA236G0118 Erigeron canadensis HOM05D000452 ORTHO05D000647 6.3e-08 60.1 36 83.3
Eucgr.C04062 Eucalyptus grandis HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
FvH4_7g03330 Fragaria vesca HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
FAN01G1180 Fragaria x ananassa HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
FAN03G2109 Fragaria x ananassa HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
FAN06G1990 Fragaria x ananassa HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
FAN10G0162 Fragaria x ananassa HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
Hma1.2p1_0182F.1_g080630 Hydrangea macrophylla HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
MD02G1283900 Malus domestica HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
Manes.06G040600 Manihot esculenta HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 78.9
Nn8g39750 Nelumbo nucifera HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
Oeu050463.2 Olea europaea HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 73.7
Phvul.003G175650 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 78.9
Psat4g034120 Pisum sativum HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 81.6
RcHm_v2.0_Chr1g0325641 Rosa chinensis HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
Sed0007575 Sechium edule HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 78.9
HPP92_018516 Vanilla planifolia HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 73.7
GSVIVG01001043001 Vitis vinifera HOM05D000452 ORTHO05D000647 6.3e-08 60.1 38 76.3
Atru.chr7.196 Acer truncatum HOM05D000452 ORTHO05D000647 8.2e-08 59.7 38 78.9
Aa31LG9G6040 Aethionema arabicum HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
AL7G44030 Arabidopsis lyrata HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
AT5G35180 Arabidopsis thaliana HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
BcaB04g18057 Brassica carinata HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
BcaC07g37673 Brassica carinata HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
A08p09630 Brassica napus HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
BolC8t48044H Brassica oleracea HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
BraA08t32960Z Brassica rapa HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
Carub.0007s3101 Capsella rubella HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
CARHR217280 Cardamine hirsuta HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
Thhalv10003438m.g Eutrema salsugineum HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
Glyma.13G156600 Glycine max HOM05D000452 ORTHO05D000647 8.2e-08 59.7 38 78.9
HanXRQChr10g0281641 Helianthus annuus HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 80.6
Lsat_1_v5_gn_8_60041 Lactuca sativa HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 83.3
MD15G1157900 Malus domestica HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 83.3
Nitab4.5_0001671g0070 Nicotiana tabacum HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 83.3
Os08g0439100 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 8.2e-08 59.7 41 73.2
Pp3c12_9430 Physcomitrium patens HOM05D000452 ORTHO05D000647 8.2e-08 59.7 38 78.9
Pp3c6_26940 Physcomitrium patens HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 80.6
Sp7g07190 Schrenkiella parvula HOM05D000452 ORTHO05D000647 8.2e-08 59.7 36 86.1
Haze_19302 Corylus avellana HOM05D000452 ORTHO05D000647 1.1e-07 59.3 38 76.3
MELO3C004450.2 Cucumis melo HOM05D000452 ORTHO05D000647 1.1e-07 59.3 38 76.3
DCAR_014828 Daucus carota HOM05D000452 ORTHO05D000647 1.1e-07 59.3 36 80.6
Glyma.17G104200 Glycine max HOM05D000452 ORTHO05D000647 1.1e-07 59.3 36 83.3
HanXRQChr09g0243291 Helianthus annuus HOM05D000452 ORTHO05D000647 1.1e-07 59.3 36 80.6
MBI15_g29773_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 1.1e-07 59.3 41 70.7
Nn2g12264 Nelumbo nucifera HOM05D000452 ORTHO05D000647 1.1e-07 59.3 38 71.1
arahy.Tifrunner.gnm1.ann1.G6MTT1 Arachis hypogaea HOM05D000452 ORTHO05D000647 1.4e-07 58.9 38 76.3
arahy.Tifrunner.gnm1.ann1.P5Q0L9 Arachis hypogaea HOM05D000452 ORTHO05D000647 1.4e-07 58.9 38 76.3
HanXRQChr05g0141531 Helianthus annuus HOM05D000452 ORTHO05D000647 1.4e-07 58.9 36 80.6
Pp3c3_27440 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.4e-07 58.9 38 78.9
Prupe.2G038700 Prunus persica HOM05D000452 ORTHO05D000647 1.4e-07 58.9 38 73.7
SHI03232 Sapria himalayana HOM05D000452 ORTHO05D000647 1.4e-07 58.9 38 78.9
SGA_v2.0_scaffold183G39856 Striga asiatica HOM05D000452 ORTHO05D000647 1.4e-07 58.9 38 76.3
Lsat_1_v5_gn_7_47401 Lactuca sativa HOM05D000452 ORTHO05D000647 1.8e-07 58.5 36 77.8
Nitab4.5_0000416g0020 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.8e-07 58.5 38 78.9
Pp3c10_12000 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.8e-07 58.5 38 76.3
Rhsim01G0049500 Rhododendron simsii HOM05D000452 ORTHO05D000647 1.8e-07 58.5 38 78.9
Sed0003353 Sechium edule HOM05D000452 ORTHO05D000647 1.8e-07 58.5 38 73.7
unitig_736.g22222 Utricularia gibba HOM05D000452 ORTHO05D000647 1.8e-07 58.5 36 80.6
Cfa020873 Carpinus fangiana HOM05D000452 ORTHO05D000647 2.4e-07 58.2 38 73.7
Lj4g0005431 Lotus japonicus HOM05D000452 ORTHO05D000647 2.4e-07 58.2 41 70.7
PSO063G6842 Papaver somniferum HOM05D000452 ORTHO05D000647 2.4e-07 58.2 38 73.7
PSO421G0133 Papaver somniferum HOM05D000452 ORTHO05D000647 2.4e-07 58.2 38 73.7
SMO367G0695 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 2.4e-07 58.2 37 75.7
Actinidia04256 Actinidia chinensis HOM05D000452 ORTHO05D000647 3.1e-07 57.8 38 73.7
Ca_21606_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 3.1e-07 57.8 36 83.3
Ca_21629_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 3.1e-07 57.8 36 83.3
Migut.K00364 Erythranthe guttata HOM05D000452 ORTHO05D000647 3.1e-07 57.8 36 80.6
Aqoxy7G03511 Aquilegia oxysepala HOM05D000452 ORTHO05D000647 4.1e-07 57.4 38 73.7
CSS0047494 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 4.1e-07 57.4 38 76.3
vmacro21878 Vaccinium macrocarpon HOM05D000452 ORTHO05D000647 4.1e-07 57.4 38 76.3
MSTRG.26311 Avicennia marina HOM05D000452 ORTHO05D000647 5.3e-07 57.0 36 77.8
Sabra18G0096200 Salix brachista HOM05D000452 ORTHO05D000647 5.3e-07 57.0 38 76.3
SMO140G0087 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 6.9e-07 56.6 38 68.4
TAR383G0911 Trochodendron aralioides HOM05D000452 ORTHO05D000647 6.9e-07 56.6 38 68.4
Potri.018G113100 Populus trichocarpa HOM05D000452 ORTHO05D000647 9.0e-07 56.2 38 76.3
Migut.K00655 Erythranthe guttata HOM05D000452 ORTHO05D000647 1.5e-06 55.5 36 77.8
CSS0048847 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 3.4e-06 54.3 38 71.1


User provided reference genes

Program Settings