Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 9.0e-170 600.1 295 100.0
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 4.5e-129 464.9 297 76.1
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 5.0e-128 461.5 295 76.9
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.5e-127 459.9 278 79.5
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 6.1e-126 454.5 294 75.9
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 6.1e-126 454.5 294 75.9
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 8.0e-126 454.1 296 75.3
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.0e-125 453.8 297 76.8
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.4e-125 453.4 297 75.1
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.8e-125 453.0 296 73.3
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 6.8e-125 451.1 297 76.4
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 8.8e-125 450.7 292 74.0
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.2e-124 450.3 291 73.5
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.2e-123 446.0 289 75.4
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 4.8e-123 444.9 295 73.6
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.8e-122 443.0 290 73.8
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.1e-122 441.8 289 75.1
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.2e-121 440.3 284 76.4
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 5.9e-121 438.0 297 71.7
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.3e-120 436.8 292 72.6
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.6e-120 434.1 289 75.4
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.5e-119 432.6 289 75.1
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.3e-119 432.2 297 72.1
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.5e-119 431.4 289 74.4
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 5.5e-119 431.4 296 70.9
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 7.2e-119 431.0 274 75.9
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.6e-118 429.9 297 72.7
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 2.8e-118 429.1 291 71.5
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 8.0e-118 427.6 297 71.4
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 4.0e-117 425.2 280 72.9
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 5.2e-117 424.9 295 71.5
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 6.8e-117 424.5 291 70.4
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 8.9e-117 424.1 267 77.5
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.5e-116 423.3 298 70.8
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 3.4e-116 422.2 289 71.6
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 5.7e-116 421.4 299 69.2
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 9.8e-116 420.6 268 76.9
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 9.8e-116 420.6 242 83.1
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 9.8e-116 420.6 287 71.4
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 1.3e-115 420.2 289 69.2
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.7e-115 419.9 286 70.6
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.2e-115 419.5 286 70.6
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 6.3e-115 417.9 297 67.7
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.4e-114 416.0 272 75.0
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 3.1e-114 415.6 290 67.6
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 4.1e-114 415.2 291 68.7
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.1e-114 415.2 289 69.6
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.6e-113 413.3 277 72.9
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.7e-113 412.5 286 70.3
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 4.5e-113 411.8 291 68.4
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 7.8e-113 411.0 286 68.5
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 2.9e-112 409.1 293 70.3
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 5.0e-112 408.3 292 70.5
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 5.0e-112 408.3 297 68.0
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 6.6e-112 407.9 287 70.7
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 6.6e-112 407.9 284 69.4
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 8.6e-112 407.5 289 67.5
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.1e-111 407.1 296 67.9
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 1.9e-111 406.4 288 70.1
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 7.3e-111 404.4 287 70.4
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 9.5e-111 404.1 291 68.4
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 9.5e-111 404.1 289 69.2
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 1.2e-110 403.7 283 70.0
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.6e-110 403.3 300 66.7
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.6e-110 402.1 285 70.5
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 4.7e-110 401.7 302 66.2
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 5.2e-109 398.3 296 66.9
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.2e-109 398.3 294 67.0
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 6.8e-109 397.9 288 67.4
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 6.8e-109 397.9 288 67.4
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.2e-108 397.1 294 67.0
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.0e-108 396.4 289 69.9
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.7e-107 393.3 286 70.3
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.2e-107 392.9 292 63.7
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.2e-107 392.9 297 65.3
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 2.7e-105 386.0 293 62.8
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 4.6e-105 385.2 260 70.0
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 5.0e-104 381.7 277 67.1
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 2.5e-103 379.4 232 79.3
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 7.3e-103 377.9 295 64.4
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 9.5e-103 377.5 286 61.2
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 2.8e-102 375.9 243 76.1
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.3e-99 367.1 293 61.4
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.7e-99 366.7 340 56.5
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 3.7e-99 365.5 239 74.5
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 9.2e-98 360.9 384 49.7
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.1e-97 359.8 295 62.4
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.6e-97 358.6 229 78.2
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.7e-96 356.7 291 61.5
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 7.3e-95 351.3 239 74.9
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.1e-94 349.7 290 60.7
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 4.7e-94 348.6 290 60.3
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.2e-92 344.0 239 67.4
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.4e-90 337.0 274 57.7
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 2.4e-90 336.3 285 58.6
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 3.0e-88 329.3 267 57.7
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 5.1e-88 328.6 243 64.6
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 5.6e-87 325.1 228 67.1
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 2.8e-86 322.8 285 55.8
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 3.6e-86 322.4 284 54.6
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 4.7e-86 322.0 271 57.9
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 6.2e-86 321.6 284 54.9
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 6.2e-86 321.6 284 54.6
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 6.2e-86 321.6 284 54.9
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 6.2e-86 321.6 284 54.9
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 8.1e-86 321.2 274 58.0
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.1e-85 320.9 285 56.8
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.8e-85 320.1 271 56.5
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.2e-85 318.5 208 72.1
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.5e-84 317.0 272 56.2
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.6e-84 316.2 194 75.3
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.3e-83 313.9 280 56.4
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 4.4e-76 288.9 272 54.8
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.7e-73 279.6 253 54.5
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.7e-72 276.9 230 59.1
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 4.3e-71 272.3 246 58.1
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 9.0e-69 264.6 213 60.1
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.2e-65 254.2 240 52.9
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.2e-60 237.7 225 53.8
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.7e-59 233.8 240 50.0
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.2e-59 233.4 277 45.8
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 7.4e-55 218.4 137 75.2
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 4.0e-53 212.6 235 46.4
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.9e-50 203.8 182 60.4
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 6.5e-43 178.7 118 72.9
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 8.2e-38 161.8 270 37.4
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 6.1e-33 145.6 127 54.3
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 3.0e-32 143.3 97 75.3
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.1e-25 120.6 156 40.4
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 4.5e-20 102.8 177 33.3
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 6.5e-19 99.0 106 50.9
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 2.1e-17 94.0 163 33.1
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.7e-17 93.6 79 60.8
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.0e-16 91.7 49 87.8
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 6.8e-16 89.0 72 58.3
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.4e-13 81.3 57 64.9
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 9.1e-13 78.6 49 71.4
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.2e-07 61.6 54 48.1
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.5e-07 61.2 231 25.5
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 1.5e-07 61.2 98 37.8


User provided reference genes

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